X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2Fstructures%2FJalviewStructureDisplayI.java;h=a27cec6ea3502e7c2afc3a20eab800f102e6e5e8;hb=e06ef51ba3dd8cdae7632d71db162ff416b88256;hp=efb60dde8f2c964ff9d1beadf43b446710e658b1;hpb=ae216fceddd8539d20fa5425cdaef3da73aba8f0;p=jalview.git

diff --git a/src/jalview/api/structures/JalviewStructureDisplayI.java b/src/jalview/api/structures/JalviewStructureDisplayI.java
index efb60dd..a27cec6 100644
--- a/src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/src/jalview/api/structures/JalviewStructureDisplayI.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,21 +20,16 @@
  */
 package jalview.api.structures;
 
-import jalview.api.FeatureRenderer;
-import jalview.api.SequenceRenderer;
-import jalview.api.SequenceStructureBinding;
-import jalview.datamodel.AlignmentI;
+import jalview.api.AlignmentViewPanel;
+import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
-import jalview.ext.jmol.JalviewJmolBinding;
 import jalview.schemes.ColourSchemeI;
-import jalview.schemes.UserColourScheme;
-import jalview.structure.StructureMappingcommandSet;
-import jalview.structure.StructureSelectionManager;
+import jalview.structures.models.AAStructureBindingModel;
 
 public interface JalviewStructureDisplayI
 {
 
-  SequenceStructureBinding getBinding();
+  AAStructureBindingModel getBinding();
 
   /**
    * @return true if there is an active GUI handling a structure display
@@ -56,13 +51,42 @@ public interface JalviewStructureDisplayI
   void dispose();
 
   /**
-   * shutdown any structure viewing processes started by this display
+   * Shutdown any Jalview structure viewing processes started by this display
+   * 
+   * @param closeExternalViewer
+   *          if true, force close any linked external viewer process
    */
-  void closeViewer();
+  void closeViewer(boolean closeExternalViewer);
+
   /**
    * apply a colourscheme to the structures in the viewer
+   * 
    * @param colourScheme
    */
   void setJalviewColourScheme(ColourSchemeI colourScheme);
 
+  /**
+   * 
+   * @return true if all background sequence/structure binding threads have
+   *         completed for this viewer instance
+   */
+  boolean hasMapping();
+
+  // construction method - move to another interface ?
+  boolean addAlreadyLoadedFile(SequenceI[] seq, String[] chains,
+          AlignmentViewPanel apanel, String pdbId);
+
+  // construction method - move to another interface ?
+  boolean addToExistingViewer(PDBEntry pdbentry, SequenceI[] seq,
+          String[] chains, AlignmentViewPanel apanel, String pdbId);
+
+  /**
+   * refresh GUI after reconfiguring structure(s) and alignment panels
+   */
+  void updateTitleAndMenus();
+
+  boolean isAlignAddedStructures();
+
+  void setAlignAddedStructures(boolean alignAdded);
+
 }