X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2Fstructures%2FJalviewStructureDisplayI.java;h=edbbbbf98d717fdc03862dbc1921de43166c5678;hb=4316d4573368e1c5455f84c6fcb96aa3a1e48045;hp=0b3820b546910d1c13abc9e3b391d85afb892bfb;hpb=c4cbb4dddb8657c7439ee10da3e3f915f5c1471c;p=jalview.git

diff --git a/src/jalview/api/structures/JalviewStructureDisplayI.java b/src/jalview/api/structures/JalviewStructureDisplayI.java
index 0b3820b..edbbbbf 100644
--- a/src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/src/jalview/api/structures/JalviewStructureDisplayI.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,19 +20,13 @@
  */
 package jalview.api.structures;
 
-import jalview.api.FeatureRenderer;
-import jalview.api.SequenceRenderer;
-import jalview.api.SequenceStructureBinding;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.SequenceI;
-import jalview.ext.jmol.JalviewJmolBinding;
-import jalview.structure.StructureMappingcommandSet;
-import jalview.structure.StructureSelectionManager;
+import jalview.schemes.ColourSchemeI;
+import jalview.structures.models.AAStructureBindingModel;
 
 public interface JalviewStructureDisplayI
 {
 
-  SequenceStructureBinding getBinding();
+  AAStructureBindingModel getBinding();
 
   /**
    * @return true if there is an active GUI handling a structure display
@@ -54,8 +48,16 @@ public interface JalviewStructureDisplayI
   void dispose();
 
   /**
-   * shutdown any structure viewing processes started by this display
+   * Shutdown any Jalview structure viewing processes started by this display
+   * 
+   * @param closeExternalViewer
+   *          if true, force close any linked external viewer process
+   */
+  void closeViewer(boolean closeExternalViewer);
+  /**
+   * apply a colourscheme to the structures in the viewer
+   * @param colourScheme
    */
-  void closeViewer();
+  void setJalviewColourScheme(ColourSchemeI colourScheme);
 
 }