X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAPopupMenu.java;h=7e17cc57e41c8eb663ba55cf59d8f52548204a7a;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=a56f76dcb2e437a13a9d459cc0bb2a0db2b01ea7;hpb=811fb76382f3601b35dc08b8c0ceabed049c3326;p=jalview.git

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index a56f76d..7e17cc5 100755
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -152,7 +152,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
 
     if (sg != null && sg.getSize() > 0)
     {
-      editGroupName.setLabel(sg.getName());
+      editGroupName.setLabel("Name: "+sg.getName());
       showText.setState(sg.getDisplayText());
       showColourText.setState(sg.getColourText());
       showBoxes.setState(sg.getDisplayBoxes());
@@ -169,7 +169,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
       remove(groupMenu);
     }
 
-    if (links != null && links.size() > 0)
+    if (seq!=null && links != null && links.size() > 0)
     {
       Menu linkMenu = new Menu("Link");
       String link;
@@ -185,7 +185,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
         final String target = urlLink.getTarget(); // link.substring(0,
         // link.indexOf("|"));
         final String label = urlLink.getLabel();
-        if (urlLink.isDynamic())
+        if (seq!=null && urlLink.isDynamic())
         {
 
           // collect matching db-refs
@@ -696,7 +696,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
       cap.setPDBImport(seq);
       Frame frame = new Frame();
       frame.add(cap);
-      jalview.bin.JalviewLite.addFrame(frame, "Paste PDB file ", 400, 300);
+      jalview.bin.JalviewLite.addFrame(frame, "Paste PDB file for sequence "+seq.getName(), 400, 300);
     }
   }
 
@@ -805,7 +805,10 @@ public class APopupMenu extends java.awt.PopupMenu implements
     toLower.addActionListener(this);
     editMenu.add(toggleCase);
     seqMenu.add(sequenceName);
-    seqMenu.add(pdb);
+    if (!ap.av.applet.useXtrnalSviewer)
+    {
+      seqMenu.add(pdb);
+    }
     seqMenu.add(repGroup);
     menu1.add(unGroupMenuItem);
     menu1.add(colourMenu);