X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAPopupMenu.java;h=803f323d480811fd8f53bea6cf75af3e5de1b38e;hb=feaa53e0e6dea15a236b99097347df52c21db896;hp=072621b942be85f66e0e13b847de5cedcddb10c4;hpb=d2af5a80096a8c0561ef5e5bee2e8978dcbf5c43;p=jalview.git

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index 072621b..803f323 100755
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -307,7 +307,7 @@ public class APopupMenu
           "Group Description",
           ap.alignFrame,
           "Edit Group Name / Description",
-          500,100);
+          500,100, true);
 
       if (dialog.accept)
       {
@@ -342,13 +342,13 @@ public class APopupMenu
 
                                                    ap.alignFrame,
                                                    "Edit Sequence",
-                                                   500, 100);
+                                                   500, 100, true);
 
         if (dialog.accept)
         {
           EditCommand editCommand = new EditCommand(
               "Edit Sequences", EditCommand.REPLACE,
-              dialog.getName(),
+              dialog.getName().replace(' ', ap.av.getGapCharacter()),
               sg.getSequencesAsArray(ap.av.hiddenRepSequences),
               sg.getStartRes(), sg.getEndRes()+1, ap.av.alignment
               );
@@ -499,7 +499,7 @@ public class APopupMenu
         "Sequence Description",
         ap.alignFrame,
         "Edit Sequence Name / Description",
-        500,100);
+        500,100, true);
 
     if (dialog.accept)
     {
@@ -517,14 +517,14 @@ public class APopupMenu
 
       if ( ap.av.applet.jmolAvailable )
        new jalview.appletgui.AppletJmol(entry,
-                                        new Sequence[]
-                                        {seq},
+                                        new Sequence[]{seq},
+                                        null,
                                         ap,
                                         AppletFormatAdapter.URL);
      else
        new MCview.AppletPDBViewer(entry,
-                                  new Sequence[]
-                                  {seq},
+                                  new Sequence[]{seq},
+                                  null,
                                   ap,
                                   AppletFormatAdapter.URL);