X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAPopupMenu.java;h=8fd317abaecb80991b8ec175dd4672e741d01f4c;hb=fc4aebb30bebcd7582b549053a353e528119a5fe;hp=dd1e089188d743b802bda249f2757a712f5413d4;hpb=e72d0b60b3078d4afed714491600efce110f0336;p=jalview.git

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index dd1e089..8fd317a 100644
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -210,7 +210,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
   Menu menu1 = new Menu();
 
   public APopupMenu(AlignmentPanel apanel, final SequenceI seq,
-          Vector<String> links)
+          List<String> links)
   {
     // /////////////////////////////////////////////////////////
     // If this is activated from the sequence panel, the user may want to
@@ -243,7 +243,24 @@ public class APopupMenu extends java.awt.PopupMenu implements
     SequenceGroup sg = ap.av.getSelectionGroup();
     if (sg != null && sg.getSize() > 0)
     {
-      conservationColour.setEnabled(!sg.isNucleotide());
+      if (sg.isNucleotide())
+      {
+        conservationColour.setEnabled(false);
+        clustalColour.setEnabled(false);
+        BLOSUM62Colour.setEnabled(false);
+        zappoColour.setEnabled(false);
+        taylorColour.setEnabled(false);
+        hydrophobicityColour.setEnabled(false);
+        helixColour.setEnabled(false);
+        strandColour.setEnabled(false);
+        turnColour.setEnabled(false);
+        buriedColour.setEnabled(false);
+      }
+      else
+      {
+        purinePyrimidineColour.setEnabled(false);
+        nucleotideColour.setEnabled(false);
+      }
       editGroupName.setLabel(MessageManager.formatMessage(
               "label.name_param", new Object[] { sg.getName() }));
       showText.setState(sg.getDisplayText());