X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAPopupMenu.java;h=9d4447987b010d3b423eb2e15506098da0c2d4a7;hb=be762d8d9c71a7aa3121e845c45911c7192b7827;hp=6fdb49c1e31e0dd3bed4641144ee1213cc15f37b;hpb=e327ac5df98f528afeb347ac9a79085ad0d0975b;p=jalview.git

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index 6fdb49c..9d44479 100644
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -835,7 +835,7 @@ public class APopupMenu extends java.awt.PopupMenu
         if (start <= end)
         {
           seqs.add(sg.getSequenceAt(i));
-          features.add(new SequenceFeature(null, null, null, start, end,
+          features.add(new SequenceFeature(null, null, start, end,
                   "Jalview"));
         }
       }
@@ -847,7 +847,8 @@ public class APopupMenu extends java.awt.PopupMenu
         {
           ap.alignFrame.sequenceFeatures.setState(true);
           ap.av.setShowSequenceFeatures(true);
-          ap.highlightSearchResults(null);
+          ap.av.setSearchResults(null); // clear highlighting
+          ap.repaint(); // draw new/amended features
         }
       }
     }