X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAPopupMenu.java;h=fe1700b904f9ee46a3200f9a0bf6e6c10f568aec;hb=2b2e4f5da97889b83c6f8b0fbe41f163feca7e82;hp=b45fa6b45e051704d94ca6e18ac02a550de7d9c3;hpb=b4877bc99e12cf4465e43e090e19277c3139ce77;p=jalview.git
diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index b45fa6b..fe1700b 100755
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -28,6 +28,7 @@ import jalview.datamodel.*;
import jalview.schemes.*;
import jalview.util.UrlLink;
import jalview.io.AppletFormatAdapter;
+import jalview.io.SequenceAnnotationReport;
public class APopupMenu extends java.awt.PopupMenu implements
ActionListener, ItemListener
@@ -107,7 +108,11 @@ public class APopupMenu extends java.awt.PopupMenu implements
MenuItem sequenceFeature = new MenuItem("Create Sequence Feature");
MenuItem editSequence = new MenuItem("Edit Sequence");
+
+ MenuItem sequenceDetails = new MenuItem("Sequence Details ...");
+ MenuItem selSeqDetails = new MenuItem("Sequence Details ...");
+
Sequence seq;
MenuItem revealAll = new MenuItem();
@@ -450,6 +455,14 @@ public class APopupMenu extends java.awt.PopupMenu implements
{
editName();
}
+ else if (source == sequenceDetails)
+ {
+ showSequenceDetails();
+ }
+ else if (source == selSeqDetails)
+ {
+ showSequenceSelectionDetails();
+ }
else if (source == pdb)
{
addPDB();
@@ -608,6 +621,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
}
+
void outputText(ActionEvent e)
{
CutAndPasteTransfer cap = new CutAndPasteTransfer(true, ap.alignFrame);
@@ -625,6 +639,41 @@ public class APopupMenu extends java.awt.PopupMenu implements
ap.av.showJVSuffix));
}
+ protected void showSequenceSelectionDetails()
+ {
+ createSequenceDetailsReport(ap.av.getSequenceSelection());
+ }
+
+ protected void showSequenceDetails()
+ {
+ createSequenceDetailsReport(new SequenceI[]{seq});
+ }
+ public void createSequenceDetailsReport(SequenceI[] sequences)
+ {
+
+ CutAndPasteTransfer cap = new CutAndPasteTransfer(false, ap.alignFrame);
+
+ StringBuffer contents = new StringBuffer();
+ for (SequenceI seq:sequences)
+ {
+ contents.append("Annotation for "+seq.getDisplayId(true)+"
");
+ new SequenceAnnotationReport(null)
+ .createSequenceAnnotationReport(
+ contents,
+ seq,
+ true,
+ true,false,
+ (ap.seqPanel.seqCanvas.fr != null) ? ap.seqPanel.seqCanvas.fr.minmax
+ : null);
+ contents.append("
");
+ }
+ Frame frame = new Frame();
+ frame.add(cap);
+ jalview.bin.JalviewLite.addFrame(frame,
+ "Sequence Details for " + (sequences.length==1 ? sequences[0].getDisplayId(true) : "Selection")
+ , 600, 500);
+ cap.setText("" + contents.toString() + "");
+ }
void editName()
{
@@ -685,6 +734,8 @@ public class APopupMenu extends java.awt.PopupMenu implements
showBoxes.setState(true);
showBoxes.addItemListener(this);
sequenceName.addActionListener(this);
+ sequenceDetails.addActionListener(this);
+ selSeqDetails.addActionListener(this);
displayNonconserved.setLabel("Show Nonconserved");
displayNonconserved.setState(false);
displayNonconserved.addItemListener(this);
@@ -705,6 +756,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
this.add(hideSeqs);
this.add(revealSeq);
this.add(revealAll);
+ // groupMenu.add(selSeqDetails);
groupMenu.add(editGroupName);
groupMenu.add(editMenu);
groupMenu.add(outputmenu);
@@ -771,6 +823,8 @@ public class APopupMenu extends java.awt.PopupMenu implements
toLower.addActionListener(this);
editMenu.add(toggleCase);
seqMenu.add(sequenceName);
+ // seqMenu.add(sequenceDetails);
+
if (!ap.av.applet.useXtrnalSviewer)
{
seqMenu.add(pdb);
@@ -799,8 +853,7 @@ public class APopupMenu extends java.awt.PopupMenu implements
{
SequenceGroup sg = getGroup();
sg.cs = new ClustalxColourScheme(
- sg.getSequences(ap.av.getHiddenRepSequences()),
- ap.av.getAlignment().getWidth());
+ sg,ap.av.getHiddenRepSequences());
refresh();
}