X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=03c0db9d20c8814eaa106c75ce7c4fb57bc987ef;hb=b787cf7f2898a09e5d78b8a610b657de57cc4ab9;hp=7b8def345ae5dfcaf58bf2eb192c84a527ae5565;hpb=de8382f6945c5648785129ba7c4bb080287c2220;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 7b8def3..03c0db9 100755
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -143,9 +143,18 @@ public class AlignFrame extends Frame implements ActionListener,
     String line = null;
     try
     {
-      URL url = new URL(file);
+      BufferedReader in = null;
+      java.io.InputStream is = getClass().getResourceAsStream("/" + file);
+      if (is != null)
+      {
+        in = new BufferedReader(new java.io.InputStreamReader(is));
+      }
+      else
+      {
+        URL url = new URL(file);
+        in = new BufferedReader(new InputStreamReader(url.openStream()));
+      }
 
-      BufferedReader in =  new BufferedReader(new InputStreamReader(url.openStream()));
       SequenceI seq = null;
       String type, desc, token;