X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=147c2dd020274cbcce590cfb020c8dcd498c95bf;hb=2267a3de329c0fb4848c6e1a42ad2d52c658f759;hp=6586a68f3c3f07bd03428c21ce2188812d8a6bd5;hpb=8ac358f8762f9a632d5dc70aa32df57ca0755244;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 6586a68..147c2dd 100755
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -980,6 +980,7 @@ public void itemStateChanged(ItemEvent evt)
   protected void deleteGroups_actionPerformed()
   {
     viewport.alignment.deleteAllGroups();
+    viewport.sequenceColours.clear();
     viewport.setSelectionGroup(null);
 
     alignPanel.repaint();