X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=96dc64b9a9432c446fbc59fc140eb1cd037c54c9;hb=cc6f7ebe59c148e62cd9f1947d9ba30638db2980;hp=01bea4d2ca495a78d649b46ceea508837daecc2b;hpb=d03971168d7f0192862cf5b57602ecf3e341b457;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 01bea4d..96dc64b 100755
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -184,8 +184,6 @@ public class AlignFrame extends Frame implements ActionListener,
           end = Integer.parseInt(st.nextToken());
 
           seq = viewport.alignment.getSequenceAt(index);
-          start = seq.findIndex(start) - 1;
-          end = seq.findIndex(end) - 1;
 
           type = st.nextToken();