X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=997f185a56799b7b8c867db959e54dc64e88b6a2;hb=b87512d6e28a2a93ea2f08dcfbee320856c5c8de;hp=1a4658548116a09afda8fd55183a2e52965b1227;hpb=006890b02106eb31841e6e84d75f1027434823e0;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 1a46585..997f185 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -25,6 +25,7 @@ import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
 import jalview.analysis.TreeBuilder;
 import jalview.analysis.scoremodels.PIDModel;
 import jalview.analysis.scoremodels.ScoreModels;
+import jalview.api.AlignFrameI;
 import jalview.api.AlignViewControllerGuiI;
 import jalview.api.AlignViewControllerI;
 import jalview.api.AlignViewportI;
@@ -121,7 +122,7 @@ import java.util.Vector;
 import org.jmol.viewer.Viewer;
 
 public class AlignFrame extends EmbmenuFrame implements ActionListener,
-        ItemListener, KeyListener, AlignViewControllerGuiI
+        ItemListener, KeyListener, AlignViewControllerGuiI, AlignFrameI
 {
   public AlignViewControllerI avc;
 
@@ -882,7 +883,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     }
     else if (source == autoCalculate)
     {
-      viewport.autoCalculateConsensus = autoCalculate.getState();
+      viewport.setAutoCalculateConsensusAndConservation(autoCalculate.getState());
     }
     else if (source == sortByTree)
     {