X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=9ba6cca8306535f98ca02cefd7af2f2c36c8f67c;hb=54904100ca490c7ca4484a88bf40963e48a35eec;hp=d72c665d133a587203c012623269f48a1d8cf816;hpb=8c1d1e78607436d66bb90bbf4299e97854967d9c;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index d72c665..9ba6cca 100755
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -415,7 +415,7 @@ public void itemStateChanged(ItemEvent evt)
     else if(source==invertSequenceMenuItem)
             invertSequenceMenuItem_actionPerformed();
     else if(source==invertColSel)
-    { viewport.invertColumnSelection(); repaint(); }
+    { viewport.invertColumnSelection(); alignPanel.repaint(); }
     else if(source==remove2LeftMenuItem)
             remove2LeftMenuItem_actionPerformed();
     else if(source==remove2RightMenuItem)
@@ -430,15 +430,15 @@ public void itemStateChanged(ItemEvent evt)
             font_actionPerformed();
     else if(source==showColumns)
     {
-      viewport.showAllHiddenColumns(); repaint();
+      viewport.showAllHiddenColumns(); alignPanel.repaint();
     }
     else if(source==showSeqs)
     {
-      viewport.showAllHiddenSeqs(); repaint();
+      viewport.showAllHiddenSeqs(); alignPanel.repaint();
     }
     else if(source == hideColumns)
     {
-      viewport.hideSelectedColumns(); repaint();
+      viewport.hideSelectedColumns(); alignPanel.repaint();
     }
     else if(source == hideSequences && viewport.getSelectionGroup()!=null)
     {