X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=ca1d158cc58335c9ece91a4432a6e14d4541bf89;hb=6dd554fdbf34db6b79595d5027159d20225f4894;hp=6c8e733f39cf491e7c811a4de221865e842ba1d2;hpb=da8b21b7e461c8f9b4c64f00de0344b4bd0ebacf;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 6c8e733..ca1d158 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -210,7 +210,6 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     if (hiddenSeqs != null && hiddenSeqs.length > 0)
     {
       viewport.hideSequence(hiddenSeqs);
-      viewport.setHasHiddenRows(true);
     }
     if (columnSelection != null)
     {
@@ -1341,8 +1340,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
             { e.getActionCommand() }), 600, 500);
 
     FeatureRenderer fr = this.alignPanel.cloneFeatureRenderer();
-    viewport.setFeatureRenderer(fr);
-    cap.setText(new AppletFormatAdapter(viewport).formatSequences(
+    cap.setText(new AppletFormatAdapter(alignPanel).formatSequences(
             e.getActionCommand(), viewport.getAlignment(),
             viewport.getShowJVSuffix()));
   }