X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=da432814af6ca8e08cceb07489e519be783a15ce;hb=5ba9b9ce2c9b6e887430d4ac80efde577ca434d4;hp=40999c6fe223a3200e3a8af43817f6772de3fa07;hpb=3fd44a9b8f3e44b671ee26be26a8c1d541de3028;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 40999c6..da43281 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -53,6 +53,7 @@ import jalview.schemes.NucleotideColourScheme;
 import jalview.schemes.PIDColourScheme;
 import jalview.schemes.PurinePyrimidineColourScheme;
 import jalview.schemes.RNAHelicesColourChooser;
+import jalview.schemes.RNAInteractionColourScheme;
 import jalview.schemes.ResidueProperties;
 import jalview.schemes.StrandColourScheme;
 import jalview.schemes.TCoffeeColourScheme;
@@ -1045,6 +1046,10 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     {
       changeColour(new PurinePyrimidineColourScheme());
     }
+    else if (source == RNAInteractionColour)
+    {
+      changeColour(new RNAInteractionColourScheme());
+    }
     else if (source == RNAHelixColour)
     {
       new RNAHelicesColourChooser(viewport, alignPanel);
@@ -2810,6 +2815,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
 
   MenuItem purinePyrimidineColour = new MenuItem();
 
+  MenuItem RNAInteractionColour = new MenuItem();
+
   MenuItem RNAHelixColour = new MenuItem();
 
   MenuItem userDefinedColour = new MenuItem();
@@ -3017,6 +3024,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     buriedColour.addActionListener(this);
     purinePyrimidineColour.setLabel(MessageManager.getString("label.purine_pyrimidine"));
     purinePyrimidineColour.addActionListener(this);
+    RNAInteractionColour.setLabel(MessageManager.getString("label.rna_interaction"));
+    RNAInteractionColour.addActionListener(this);
     RNAHelixColour.setLabel(MessageManager.getString("action.by_rna_helixes"));
     RNAHelixColour.addActionListener(this);
     userDefinedColour.setLabel(MessageManager.getString("action.user_defined"));
@@ -3243,6 +3252,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     colourMenu.add(buriedColour);
     colourMenu.add(nucleotideColour);
     colourMenu.add(purinePyrimidineColour);
+    //    colourMenu.add(RNAInteractionColour);
     colourMenu.add(tcoffeeColour);
     colourMenu.add(userDefinedColour);
     colourMenu.addSeparator();