X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=fe6b8d9db6cb98c21bce3f057bd1957b8518f83c;hb=9907d58721e88d7546d5f9d441b575573ae00a9a;hp=ef8767128db8fca4832a3fac584f3c66a88b25bd;hpb=161e8cc8828152180efe8ab861487fea051e4efc;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index ef87671..fe6b8d9 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -1445,9 +1445,10 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     FeaturesFile formatter = new FeaturesFile();
     if (format.equalsIgnoreCase("Jalview"))
     {
-      features = formatter.printJalviewFormat(viewport.getAlignment()
-              .getSequencesArray(), getDisplayedFeatureCols(),
-              getDisplayedFeatureGroups(), true);
+      features = formatter.printJalviewFormat(
+              viewport.getAlignment().getSequencesArray(),
+              getDisplayedFeatureCols(), null, getDisplayedFeatureGroups(),
+              true);
     }
     else
     {