X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=4b4d74dfdbb871bdf7fa344527e9838e5d314f9c;hb=37502eaea952faeafb2bbf5aed3fcfc671de6326;hp=e513829e9dc1e9bc5dce980a8e8e5e3610010228;hpb=a9da23fb2862cd01e441858e66684a35675ea3ea;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index e513829..4b4d74d 100755
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -301,6 +301,9 @@ public class AlignViewport
       consensus.annotations = annotations;
     }
 
+    if(globalColourScheme!=null)
+          globalColourScheme.setConsensus(vconsensus);
+
   }
 
   public SequenceGroup getSelectionGroup()