X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=9f6448d513ceb2a995cff47383a2cbc2b265b609;hb=2ad64bdec4782e3fbfa3b5867a1aa7d1571629fa;hp=cd6515e403cafa5af942d20afebc990164f45986;hpb=27156beed73b8e97298a62ffe67691b6b683ec68;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index cd6515e..9f6448d 100755
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -56,7 +56,7 @@ public class AlignViewport
   boolean conservationColourSelected = false;
   boolean abovePIDThreshold = false;
 
-  SequenceGroup selectionGroup = new SequenceGroup();
+  SequenceGroup selectionGroup;
 
   int charHeight;
   int charWidth;
@@ -581,32 +581,6 @@ public class AlignViewport
     return increment;
   }
 
-  public int getIndex(int y)
-  {
-    int y1 = 0;
-    int starty = getStartSeq();
-    int endy = getEndSeq();
-
-    for (int i = starty; i <= endy; i++)
-    {
-      if (i < alignment.getHeight() && alignment.getSequenceAt(i) != null)
-      {
-        int y2 = y1 + getCharHeight();
-
-        if (y >= y1 && y <= y2)
-        {
-          return i;
-        }
-        y1 = y2;
-      }
-      else
-      {
-        return -1;
-      }
-    }
-    return -1;
-  }
-
   public ColumnSelection getColumnSelection()
   {
     return colSel;