X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=c1de259629971a2732213e1fe32035acb77b71e8;hb=ca160187a050f6d4e50158cd5b51f75c83a7179e;hp=0324d8ca61964aa02c00274c6aa4bd7cbcf11d06;hpb=17e4ea278bc9a5fb280db1252ce78b7a295215f5;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 0324d8c..c1de259 100644
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -77,14 +77,14 @@ public class AlignViewport extends AlignmentViewport
         }
         if (widthScale <= 1.0)
         {
-          System.err.println(
+          jalview.bin.Console.errPrintln(
                   "Invalid alignment character width scaling factor ("
                           + widthScale + "). Ignoring.");
           widthScale = 1;
         }
         if (JalviewLite.debug)
         {
-          System.err.println(
+          jalview.bin.Console.errPrintln(
                   "Alignment character width scaling factor is now "
                           + widthScale);
         }
@@ -100,14 +100,14 @@ public class AlignViewport extends AlignmentViewport
         }
         if (heightScale <= 1.0)
         {
-          System.err.println(
+          jalview.bin.Console.errPrintln(
                   "Invalid alignment character height scaling factor ("
                           + heightScale + "). Ignoring.");
           heightScale = 1;
         }
         if (JalviewLite.debug)
         {
-          System.err.println(
+          jalview.bin.Console.errPrintln(
                   "Alignment character height scaling factor is now "
                           + heightScale);
         }
@@ -192,9 +192,8 @@ public class AlignViewport extends AlignmentViewport
 
       if (colour != null)
       {
-        residueShading = new ResidueShader(
-                ColourSchemeProperty.getColourScheme(this, alignment,
-                        colour));
+        residueShading = new ResidueShader(ColourSchemeProperty
+                .getColourScheme(this, alignment, colour));
         if (residueShading != null)
         {
           residueShading.setConsensus(hconsensus);
@@ -392,10 +391,10 @@ public class AlignViewport extends AlignmentViewport
   }
 
   /**
-   * Applies the supplied feature settings descriptor to currently known features.
-   * This supports an 'initial configuration' of feature colouring based on a
-   * preset or user favourite. This may then be modified in the usual way using
-   * the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
+   * Applies the supplied feature settings descriptor to currently known
+   * features. This supports an 'initial configuration' of feature colouring
+   * based on a preset or user favourite. This may then be modified in the usual
+   * way using the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
    * 
    * @param featureSettings
    */
@@ -406,10 +405,10 @@ public class AlignViewport extends AlignmentViewport
   }
 
   /**
-   * Merges the supplied feature settings descriptor with existing feature styles.
-   * This supports an 'initial configuration' of feature colouring based on a
-   * preset or user favourite. This may then be modified in the usual way using
-   * the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
+   * Merges the supplied feature settings descriptor with existing feature
+   * styles. This supports an 'initial configuration' of feature colouring based
+   * on a preset or user favourite. This may then be modified in the usual way
+   * using the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
    * 
    * @param featureSettings
    */