X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=c1de259629971a2732213e1fe32035acb77b71e8;hb=cd669a0e8c7b91b379bca8fe6e702cf0fcbd1ce0;hp=66bb7a5da4623c670eac5b1a73845a5ed93c3d22;hpb=2a71f039ec3e1fdf9d9b13e4cef388b9c090c29c;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 66bb7a5..c1de259 100644
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -52,8 +52,6 @@ public class AlignViewport extends AlignmentViewport
 
   public jalview.bin.JalviewLite applet;
 
-  boolean MAC = false;
-
   private AnnotationColumnChooser annotationColumnSelectionState;
 
   public AlignViewport(AlignmentI al, JalviewLite applet)
@@ -79,14 +77,14 @@ public class AlignViewport extends AlignmentViewport
         }
         if (widthScale <= 1.0)
         {
-          System.err.println(
+          jalview.bin.Console.errPrintln(
                   "Invalid alignment character width scaling factor ("
                           + widthScale + "). Ignoring.");
           widthScale = 1;
         }
         if (JalviewLite.debug)
         {
-          System.err.println(
+          jalview.bin.Console.errPrintln(
                   "Alignment character width scaling factor is now "
                           + widthScale);
         }
@@ -102,14 +100,14 @@ public class AlignViewport extends AlignmentViewport
         }
         if (heightScale <= 1.0)
         {
-          System.err.println(
+          jalview.bin.Console.errPrintln(
                   "Invalid alignment character height scaling factor ("
                           + heightScale + "). Ignoring.");
           heightScale = 1;
         }
         if (JalviewLite.debug)
         {
-          System.err.println(
+          jalview.bin.Console.errPrintln(
                   "Alignment character height scaling factor is now "
                           + heightScale);
         }
@@ -117,8 +115,6 @@ public class AlignViewport extends AlignmentViewport
     }
     setFont(font, true);
 
-    MAC = new jalview.util.Platform().isAMac();
-
     if (applet != null)
     {
       setShowJVSuffix(
@@ -196,9 +192,8 @@ public class AlignViewport extends AlignmentViewport
 
       if (colour != null)
       {
-        residueShading = new ResidueShader(
-                ColourSchemeProperty.getColourScheme(this, alignment,
-                        colour));
+        residueShading = new ResidueShader(ColourSchemeProperty
+                .getColourScheme(this, alignment, colour));
         if (residueShading != null)
         {
           residueShading.setConsensus(hconsensus);
@@ -257,7 +252,7 @@ public class AlignViewport extends AlignmentViewport
 
   public void resetSeqLimits(int height)
   {
-    ranges.setEndSeq(height / getCharHeight());
+    ranges.setEndSeq(height / getCharHeight() - 1); // BH 2019.04.18
   }
 
   boolean centreColumnLabels;
@@ -396,10 +391,10 @@ public class AlignViewport extends AlignmentViewport
   }
 
   /**
-   * Applies the supplied feature settings descriptor to currently known features.
-   * This supports an 'initial configuration' of feature colouring based on a
-   * preset or user favourite. This may then be modified in the usual way using
-   * the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
+   * Applies the supplied feature settings descriptor to currently known
+   * features. This supports an 'initial configuration' of feature colouring
+   * based on a preset or user favourite. This may then be modified in the usual
+   * way using the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
    * 
    * @param featureSettings
    */
@@ -410,10 +405,10 @@ public class AlignViewport extends AlignmentViewport
   }
 
   /**
-   * Merges the supplied feature settings descriptor with existing feature styles.
-   * This supports an 'initial configuration' of feature colouring based on a
-   * preset or user favourite. This may then be modified in the usual way using
-   * the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
+   * Merges the supplied feature settings descriptor with existing feature
+   * styles. This supports an 'initial configuration' of feature colouring based
+   * on a preset or user favourite. This may then be modified in the usual way
+   * using the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
    * 
    * @param featureSettings
    */