X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=d7ec681351bec6e9bef8e1bc1e2563a117613577;hb=2e2e6d269fbaa505151fe777374f41111f2910d5;hp=607dc05fc4d7104cde0a336b3ba00bcaf5a5f05c;hpb=60bf4c4778ecca475a951c4dd00731933d0b7c59;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 607dc05..d7ec681 100644
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -23,6 +23,7 @@ package jalview.appletgui;
 import java.awt.Font;
 
 import jalview.analysis.NJTree;
+import jalview.api.AlignExportSettingI;
 import jalview.api.AlignViewportI;
 import jalview.api.FeatureRenderer;
 import jalview.bin.JalviewLite;
@@ -60,7 +61,7 @@ public class AlignViewport extends AlignmentViewport implements
 
   private FeatureRenderer featureRenderer;
 
-  private boolean includeHiddenRegion = true;
+  private AlignExportSettingI exportSettings;
 
   public void finalize()
   {
@@ -485,14 +486,15 @@ public class AlignViewport extends AlignmentViewport implements
 
   }
 
-  public boolean isIncludeHiddenRegion()
+  public AlignExportSettingI getExportSettings()
   {
-    return includeHiddenRegion;
+    return exportSettings;
   }
 
-  public void setIncludeHiddenRegion(boolean includeHiddenRegion)
+  public void setExportSettings(AlignExportSettingI exportSettings)
   {
-    this.includeHiddenRegion = includeHiddenRegion;
+    this.exportSettings = exportSettings;
   }
 
+
 }