X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=e434825a8e94f029d272696b1174b35d3120ae3b;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=607dc05fc4d7104cde0a336b3ba00bcaf5a5f05c;hpb=ecdc53f0d45b7533878cef236fff851ea64ef9a9;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 607dc05..e434825 100644
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -20,11 +20,8 @@
  */
 package jalview.appletgui;
 
-import java.awt.Font;
-
 import jalview.analysis.NJTree;
 import jalview.api.AlignViewportI;
-import jalview.api.FeatureRenderer;
 import jalview.bin.JalviewLite;
 import jalview.commands.CommandI;
 import jalview.datamodel.AlignmentI;
@@ -41,6 +38,8 @@ import jalview.structure.StructureSelectionManager;
 import jalview.structure.VamsasSource;
 import jalview.viewmodel.AlignmentViewport;
 
+import java.awt.Font;
+
 public class AlignViewport extends AlignmentViewport implements
         SelectionSource, VamsasSource, CommandListener
 {
@@ -58,10 +57,6 @@ public class AlignViewport extends AlignmentViewport implements
 
   private AnnotationColumnChooser annotationColumnSelectionState;
 
-  private FeatureRenderer featureRenderer;
-
-  private boolean includeHiddenRegion = true;
-
   public void finalize()
   {
     applet = null;
@@ -292,7 +287,6 @@ public class AlignViewport extends AlignmentViewport implements
     return font;
   }
 
-
   public void resetSeqLimits(int height)
   {
     setEndSeq(height / getCharHeight());
@@ -308,7 +302,6 @@ public class AlignViewport extends AlignmentViewport implements
     return currentTree;
   }
 
-
   boolean centreColumnLabels;
 
   public boolean getCentreColumnLabels()
@@ -330,8 +323,8 @@ public class AlignViewport extends AlignmentViewport implements
   public void sendSelection()
   {
     getStructureSelectionManager().sendSelection(
-                    new SequenceGroup(getSelectionGroup()),
-                    new ColumnSelection(getColumnSelection()), this);
+            new SequenceGroup(getSelectionGroup()),
+            new ColumnSelection(getColumnSelection()), this);
   }
 
   /**
@@ -472,27 +465,4 @@ public class AlignViewport extends AlignmentViewport implements
     }
   }
 
-  @Override
-  public FeatureRenderer getFeatureRenderer()
-  {
-    return featureRenderer;
-  }
-
-  @Override
-  public void setFeatureRenderer(FeatureRenderer featureRenderer)
-  {
-    this.featureRenderer = featureRenderer;
-
-  }
-
-  public boolean isIncludeHiddenRegion()
-  {
-    return includeHiddenRegion;
-  }
-
-  public void setIncludeHiddenRegion(boolean includeHiddenRegion)
-  {
-    this.includeHiddenRegion = includeHiddenRegion;
-  }
-
 }