X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignmentPanel.java;h=02ad0cd285473d6bd24ddef1ade55867197109c3;hb=53a90a961a55fad88199165bdc4c665ba90c28b3;hp=98f44c6078b1ebffc6955d1c10df6945afd64cfc;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index 98f44c6..02ad0cd 100644
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -6,14 +6,16 @@
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.appletgui;
@@ -433,7 +435,9 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
     {
       annotationSpaceFillerHolder.setVisible(b);
       annotationPanelHolder.setVisible(b);
-    } else {
+    }
+    else
+    {
       annotationSpaceFillerHolder.setVisible(false);
       annotationPanelHolder.setVisible(false);
     }
@@ -484,10 +488,12 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
 
     if (adjustPanelHeight)
     {
-      // NOTE: this logic is different in the application. Need a better algorithm to define behaviour
+      // NOTE: this logic is different in the application. Need a better
+      // algorithm to define behaviour
       // sets initial preferred height
       // try and set height according to alignment
-      float sscaling = (float) ((av.getCharHeight() * av.getAlignment().getHeight())/(1.0*mheight));
+      float sscaling = (float) ((av.getCharHeight() * av.getAlignment()
+              .getHeight()) / (1.0 * mheight));
       if (sscaling > 0.5)
       {
         // if the alignment is too big then
@@ -496,7 +502,7 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
       }
       else
       {
-        // otherwise just set the panel so that one row of sequence is visible 
+        // otherwise just set the panel so that one row of sequence is visible
         height = -av.getCharHeight() * 1
                 + (int) (seqandannot * (1 - sscaling));
       }
@@ -547,13 +553,13 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
       annotationPanelHolder.setVisible(true);
       annotationSpaceFillerHolder.setVisible(true);
     }
-    
+
     idSpaceFillerPanel1.setVisible(!wrap);
 
     fontChanged(); // This is so that the scalePanel is resized correctly
 
     validate();
-    sequenceHolderPanel.revalidate();
+    sequenceHolderPanel.validate();
     repaint();
 
   }
@@ -823,7 +829,7 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
 
     seqPanel.seqCanvas.repaint();
     idPanel.idCanvas.repaint();
-    if (!av.wrapAlignment) 
+    if (!av.wrapAlignment)
     {
       if (av.showAnnotation)
       {
@@ -832,7 +838,7 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
       }
       scalePanel.repaint();
     }
-    
+
   }
 
   protected Panel sequenceHolderPanel = new Panel();