X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignmentPanel.java;h=19ab59aa10c076aa3970840f1ad0da3799a58270;hb=a7c6040f0728cbcc8945b3cec023160c31469a6e;hp=83d8ade3f12bd4cd1da7664bbf80195719b360ed;hpb=b24a7070977bdbb780ec0a0e218935966af94b65;p=jalview.git

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index 83d8ade..19ab59a 100644
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -554,8 +554,8 @@ public class AlignmentPanel extends Panel
     // this is called after loading new annotation onto alignment
     if (alignFrame.getSize().height == 0)
     {
-      System.out.println(
-              "adjustAnnotationHeight frame size zero NEEDS FIXING");
+      // panel not laid out yet?
+      return;
     }
     fontChanged();
     validateAnnotationDimensions(true);
@@ -669,14 +669,9 @@ public class AlignmentPanel extends Panel
     }
     else
     {
-      int width = av.getAlignment().getWidth();
+      int width = av.getAlignment().getVisibleWidth();
       int height = av.getAlignment().getHeight();
 
-      if (av.hasHiddenColumns())
-      {
-        width = av.getAlignment().getHiddenColumns()
-                .absoluteToVisibleColumn(width);
-      }
       if (x < 0)
       {
         x = 0;