X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignmentPanel.java;h=8c935992ed529e658cc29d37de942ccc87518a7f;hb=37a5dfc3c72a42689e90ad8a0e118e8855d9868b;hp=13eb06fcb9b74a0dabd0a33e24ac73bf4dcbf70c;hpb=5cd5b6e7864fe435ceb3f5c2f339a436ea0aac93;p=jalview.git

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index 13eb06f..8c93599 100755
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -347,6 +347,9 @@ public class AlignmentPanel extends Panel implements AdjustmentListener
     if(av.hasHiddenColumns)
      width = av.getColumnSelection().findColumnPosition(width);
 
+    av.setStartRes(x);
+    av.setStartSeq(y);
+
     av.setEndRes( (x + (seqPanel.seqCanvas.getSize().width / av.charWidth)) -1);
 
     hextent = seqPanel.seqCanvas.getSize().width / av.charWidth;