X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignmentPanel.java;h=a677eff2ece24d8755e0acddd0005337c3e9dcc5;hb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;hp=fd03e3029c52a63db3846c0d0d558170e7ad3ad9;hpb=1889827c44c51f6353fe8619e5d44b421158af23;p=jalview.git

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index fd03e30..a677eff 100644
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -435,7 +435,9 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
     {
       annotationSpaceFillerHolder.setVisible(b);
       annotationPanelHolder.setVisible(b);
-    } else {
+    }
+    else
+    {
       annotationSpaceFillerHolder.setVisible(false);
       annotationPanelHolder.setVisible(false);
     }
@@ -486,10 +488,12 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
 
     if (adjustPanelHeight)
     {
-      // NOTE: this logic is different in the application. Need a better algorithm to define behaviour
+      // NOTE: this logic is different in the application. Need a better
+      // algorithm to define behaviour
       // sets initial preferred height
       // try and set height according to alignment
-      float sscaling = (float) ((av.getCharHeight() * av.getAlignment().getHeight())/(1.0*mheight));
+      float sscaling = (float) ((av.getCharHeight() * av.getAlignment()
+              .getHeight()) / (1.0 * mheight));
       if (sscaling > 0.5)
       {
         // if the alignment is too big then
@@ -498,7 +502,7 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
       }
       else
       {
-        // otherwise just set the panel so that one row of sequence is visible 
+        // otherwise just set the panel so that one row of sequence is visible
         height = -av.getCharHeight() * 1
                 + (int) (seqandannot * (1 - sscaling));
       }
@@ -549,7 +553,7 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
       annotationPanelHolder.setVisible(true);
       annotationSpaceFillerHolder.setVisible(true);
     }
-    
+
     idSpaceFillerPanel1.setVisible(!wrap);
 
     fontChanged(); // This is so that the scalePanel is resized correctly
@@ -825,7 +829,7 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
 
     seqPanel.seqCanvas.repaint();
     idPanel.idCanvas.repaint();
-    if (!av.wrapAlignment) 
+    if (!av.wrapAlignment)
     {
       if (av.showAnnotation)
       {
@@ -834,7 +838,7 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
       }
       scalePanel.repaint();
     }
-    
+
   }
 
   protected Panel sequenceHolderPanel = new Panel();