X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignmentPanel.java;h=df8fe874d9a3bf98bc03b515a1ac29d70bd60e4c;hb=07179fa211fc224a57afbb79f6e8239f36fbf6f0;hp=83d8ade3f12bd4cd1da7664bbf80195719b360ed;hpb=b24a7070977bdbb780ec0a0e218935966af94b65;p=jalview.git

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index 83d8ade..df8fe87 100644
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -43,9 +43,11 @@ import java.awt.event.AdjustmentEvent;
 import java.awt.event.AdjustmentListener;
 import java.awt.event.ComponentAdapter;
 import java.awt.event.ComponentEvent;
+import java.awt.image.BufferedImage;
 import java.beans.PropertyChangeEvent;
 import java.util.List;
 
+@SuppressWarnings("serial")
 public class AlignmentPanel extends Panel
         implements AdjustmentListener, AlignmentViewPanel, ViewportListenerI
 {
@@ -177,6 +179,7 @@ public class AlignmentPanel extends Panel
     return av;
   }
 
+  @Override
   public SequenceRenderer getSequenceRenderer()
   {
     return seqPanel.seqCanvas.sr;
@@ -415,7 +418,7 @@ public class AlignmentPanel extends Panel
   public boolean scrollTo(int ostart, int end, int seqIndex,
           boolean scrollToNearest, boolean redrawOverview)
   {
-    int startv, endv, starts, ends, width;
+    int startv, endv, starts, ends;//, width;
 
     int start = -1;
     if (av.hasHiddenColumns())
@@ -669,14 +672,9 @@ public class AlignmentPanel extends Panel
     }
     else
     {
-      int width = av.getAlignment().getWidth();
+      int width = av.getAlignment().getVisibleWidth();
       int height = av.getAlignment().getHeight();
 
-      if (av.hasHiddenColumns())
-      {
-        width = av.getAlignment().getHiddenColumns()
-                .absoluteToVisibleColumn(width);
-      }
       if (x < 0)
       {
         x = 0;
@@ -1162,4 +1160,10 @@ public class AlignmentPanel extends Panel
 
   }
 
+  @Override
+  public void overviewDone(BufferedImage miniMe)
+  {
+    overviewPanel.canvas.finalizeDraw(miniMe);
+  }
+
 }