X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAnnotationColumnChooser.java;h=206b132b58534e51a5772ed7719aa048717fd38a;hb=c17981672620e0b780a2338bd0c74e55cf9ddec2;hp=0ff9a3350b013b2d1b29dccb25e5022f50491392;hpb=f1e2d882404c5cdc821a772f0bd6103a226822ac;p=jalview.git

diff --git a/src/jalview/appletgui/AnnotationColumnChooser.java b/src/jalview/appletgui/AnnotationColumnChooser.java
index 0ff9a33..206b132 100644
--- a/src/jalview/appletgui/AnnotationColumnChooser.java
+++ b/src/jalview/appletgui/AnnotationColumnChooser.java
@@ -295,7 +295,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter implements
         av.getAlignment().setHiddenColumns(oldHidden);
       }
       av.sendSelection();
-      ap.paintAlignment(true);
+      ap.paintAlignment(true, true);
     }
 
   }
@@ -337,7 +337,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter implements
           sliderDragging = false;
           valueChanged(true);
         }
-        ap.paintAlignment(true);
+        ap.paintAlignment(true, true);
       }
     });
   }
@@ -348,8 +348,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter implements
     if (slider.isEnabled())
     {
       getCurrentAnnotation().threshold.value = slider.getValue() / 1000f;
-      updateView();
-      ap.paintAlignment(false);
+      updateView(); // this also calls paintAlignment(true,true)
     }
   }
 
@@ -504,7 +503,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter implements
     filterParams = null;
     av.setAnnotationColumnSelectionState(this);
     av.sendSelection();
-    ap.paintAlignment(true);
+    ap.paintAlignment(true, true);
   }
 
   public HiddenColumns getOldHiddenColumns()