X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAnnotationLabels.java;h=6e3257d91018a7f32fea9561178338b8f058feb4;hb=aee4f1ed59e360cfee845b480d6d85550b7e6d82;hp=c76e2cfb1d48719f455296e7db565f764e8b0f17;hpb=761905b8d753ec00c5bee0abb8de1840ff580165;p=jalview.git

diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java
index c76e2cf..6e3257d 100755
--- a/src/jalview/appletgui/AnnotationLabels.java
+++ b/src/jalview/appletgui/AnnotationLabels.java
@@ -226,7 +226,8 @@ public class AnnotationLabels extends Panel
     ap.annotationPanel.adjustPanelHeight();
     setSize(getSize().width, ap.annotationPanel.getSize().height);
     ap.validate();
-    ap.paintAlignment(true);
+    // TODO: only paint if we needed to
+    ap.paintAlignment(true, true);
   }
 
   boolean editLabelDescription(AlignmentAnnotation annotation)
@@ -548,7 +549,7 @@ public class AnnotationLabels extends Panel
                 {
                   ap.av.setIgnoreGapsConsensus(cbmi.getState(), ap);
                 }
-                ap.paintAlignment(true);
+                ap.paintAlignment(true, true);
               }
             });
             popup.add(cbmi);
@@ -756,7 +757,7 @@ public class AnnotationLabels extends Panel
                 }
               }
             }
-            ap.paintAlignment(false);
+            ap.paintAlignment(false, false);
             PaintRefresher.Refresh(ap, ap.av.getSequenceSetId());
             ap.av.sendSelection();
           }
@@ -813,7 +814,7 @@ public class AnnotationLabels extends Panel
               sg.addSequence(aa[selectedRow].sequenceRef, false);
             }
             ap.av.setSelectionGroup(sg);
-            ap.paintAlignment(false);
+            ap.paintAlignment(false, false);
             PaintRefresher.Refresh(ap, ap.av.getSequenceSetId());
             ap.av.sendSelection();
           }