X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAnnotationLabels.java;h=b28ccc7f9afd45b61b509f3db213e1bd038df2ed;hb=c64a7d0a951e5ceee8cce4c8b15f86464e287b12;hp=2344719f3db95b2e179117c64a6adced12f08987;hpb=4367b86b1364ac33a25024d7564ba57310b93f21;p=jalview.git diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java index 2344719..b28ccc7 100755 --- a/src/jalview/appletgui/AnnotationLabels.java +++ b/src/jalview/appletgui/AnnotationLabels.java @@ -1,30 +1,56 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.appletgui; -import java.util.*; - -import java.awt.*; -import java.awt.event.*; -import java.awt.image.BufferedImage; - - -import jalview.datamodel.*; +import jalview.analysis.AlignmentUtils; +import jalview.datamodel.AlignmentAnnotation; +import jalview.datamodel.Annotation; +import jalview.datamodel.SequenceGroup; +import jalview.datamodel.SequenceI; +import jalview.util.MessageManager; +import jalview.util.ParseHtmlBodyAndLinks; + +import java.awt.Checkbox; +import java.awt.CheckboxMenuItem; +import java.awt.Color; +import java.awt.Dimension; +import java.awt.FlowLayout; +import java.awt.FontMetrics; +import java.awt.Frame; +import java.awt.Graphics; +import java.awt.Image; +import java.awt.MenuItem; +import java.awt.Panel; +import java.awt.PopupMenu; +import java.awt.event.ActionEvent; +import java.awt.event.ActionListener; +import java.awt.event.InputEvent; +import java.awt.event.ItemEvent; +import java.awt.event.ItemListener; +import java.awt.event.MouseEvent; +import java.awt.event.MouseListener; +import java.awt.event.MouseMotionListener; +import java.util.Arrays; +import java.util.Collections; +import java.util.Vector; public class AnnotationLabels extends Panel implements ActionListener, MouseListener, MouseMotionListener @@ -92,10 +118,13 @@ public class AnnotationLabels extends Panel implements ActionListener, this.av = av; } - public void setScrollOffset(int y) + public void setScrollOffset(int y, boolean repaint) { scrollOffset = y; - repaint(); + if (repaint) + { + repaint(); + } } /** @@ -107,7 +136,8 @@ public class AnnotationLabels extends Panel implements ActionListener, int getSelectedRow(int y) { int row = -2; - AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation(); + AlignmentAnnotation[] aa = ap.av.getAlignment() + .getAlignmentAnnotation(); if (aa == null) { @@ -132,22 +162,23 @@ public class AnnotationLabels extends Panel implements ActionListener, return row; } + @Override public void actionPerformed(ActionEvent evt) { - AlignmentAnnotation[] aa = av.alignment.getAlignmentAnnotation(); + AlignmentAnnotation[] aa = av.getAlignment().getAlignmentAnnotation(); if (evt.getActionCommand().equals(ADDNEW)) { AlignmentAnnotation newAnnotation = new AlignmentAnnotation("", null, - new Annotation[ap.av.alignment.getWidth()]); + new Annotation[ap.av.getAlignment().getWidth()]); if (!editLabelDescription(newAnnotation)) { return; } - ap.av.alignment.addAnnotation(newAnnotation); - ap.av.alignment.setAnnotationIndex(newAnnotation, 0); + ap.av.getAlignment().addAnnotation(newAnnotation); + ap.av.getAlignment().setAnnotationIndex(newAnnotation, 0); } else if (evt.getActionCommand().equals(EDITNAME)) { @@ -183,6 +214,14 @@ public class AnnotationLabels extends Panel implements ActionListener, } } + refresh(); + } + + /** + * Adjust size and repaint + */ + protected void refresh() + { ap.annotationPanel.adjustPanelHeight(); setSize(getSize().width, ap.annotationPanel.getSize().height); ap.validate(); @@ -215,44 +254,68 @@ public class AnnotationLabels extends Panel implements ActionListener, return true; } else + { return false; + } } boolean resizePanel = false; + @Override public void mouseMoved(MouseEvent evt) { resizePanel = evt.getY() < 10 && evt.getX() < 14; - int row = getSelectedRow(evt.getY() + scrollOffset); if (row > -1) { + ParseHtmlBodyAndLinks phb = new ParseHtmlBodyAndLinks( + av.getAlignment().getAlignmentAnnotation()[row] + .getDescription(true), + true, "\n"); if (tooltip == null) { - tooltip = new Tooltip( - ap.av.alignment.getAlignmentAnnotation()[row] - .getDescription(true), - this); + tooltip = new Tooltip(phb.getNonHtmlContent(), this); } else { - tooltip.setTip(ap.av.alignment.getAlignmentAnnotation()[row] - .getDescription(true)); + tooltip.setTip(phb.getNonHtmlContent()); } } else if (tooltip != null) { tooltip.setTip(""); } - } + /** + * curent drag position + */ MouseEvent dragEvent = null; + /** + * flag to indicate drag events should be ignored + */ + private boolean dragCancelled = false; + + /** + * clear any drag events in progress + */ + public void cancelDrag() + { + dragEvent = null; + dragCancelled = true; + } + + @Override public void mouseDragged(MouseEvent evt) { + if (dragCancelled) + { + return; + } + ; dragEvent = evt; if (resizePanel) @@ -261,8 +324,8 @@ public class AnnotationLabels extends Panel implements ActionListener, .getSize(), f = ap.seqPanelHolder.getSize(); int dif = evt.getY() - oldY; - dif /= ap.av.charHeight; - dif *= ap.av.charHeight; + dif /= ap.av.getCharHeight(); + dif *= ap.av.getCharHeight(); if ((d.height - dif) > 20 && (f.height + dif) > 20) { @@ -273,7 +336,7 @@ public class AnnotationLabels extends Panel implements ActionListener, ap.annotationPanelHolder.setSize(new Dimension(d.width, d.height - dif)); ap.apvscroll.setValues(ap.apvscroll.getValue(), d.height - dif, 0, - ap.annotationPanel.calcPanelHeight()); + av.calcPanelHeight()); f.height += dif; ap.seqPanelHolder.setPreferredSize(f); ap.setScrollValues(av.getStartRes(), av.getStartSeq()); @@ -285,22 +348,64 @@ public class AnnotationLabels extends Panel implements ActionListener, } else { + int diff; + if ((diff = 6 - evt.getY()) > 0) + { + // nudge scroll up + ap.apvscroll.setValue(ap.apvscroll.getValue() - diff); + ap.adjustmentValueChanged(null); + + } + else if ((0 < (diff = 6 + - ap.annotationSpaceFillerHolder.getSize().height + + evt.getY()))) + { + // nudge scroll down + ap.apvscroll.setValue(ap.apvscroll.getValue() + diff); + ap.adjustmentValueChanged(null); + } repaint(); } } + @Override public void mouseClicked(MouseEvent evt) { } + @Override public void mouseReleased(MouseEvent evt) { + if (!resizePanel && !dragCancelled) + { + int start = selectedRow; + + int end = getSelectedRow(evt.getY() + scrollOffset); + + if (start > -1 && start != end) + { + // Swap these annotations + AlignmentAnnotation startAA = ap.av.getAlignment() + .getAlignmentAnnotation()[start]; + if (end == -1) + { + end = ap.av.getAlignment().getAlignmentAnnotation().length - 1; + } + AlignmentAnnotation endAA = ap.av.getAlignment() + .getAlignmentAnnotation()[end]; + + ap.av.getAlignment().getAlignmentAnnotation()[end] = startAA; + ap.av.getAlignment().getAlignmentAnnotation()[start] = endAA; + } + } resizePanel = false; dragEvent = null; + dragCancelled = false; repaint(); ap.annotationPanel.repaint(); } + @Override public void mouseEntered(MouseEvent evt) { if (evt.getY() < 10 && evt.getX() < 14) @@ -310,8 +415,10 @@ public class AnnotationLabels extends Panel implements ActionListener, } } + @Override public void mouseExited(MouseEvent evt) { + dragCancelled = false; if (dragEvent == null) { @@ -327,6 +434,7 @@ public class AnnotationLabels extends Panel implements ActionListener, repaint(); } + @Override public void mousePressed(MouseEvent evt) { oldY = evt.getY(); @@ -334,16 +442,19 @@ public class AnnotationLabels extends Panel implements ActionListener, { return; } + dragCancelled = false; // todo: move below to mouseClicked ? selectedRow = getSelectedRow(evt.getY() + scrollOffset); - AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation(); + AlignmentAnnotation[] aa = ap.av.getAlignment() + .getAlignmentAnnotation(); // DETECT RIGHT MOUSE BUTTON IN AWT if ((evt.getModifiers() & InputEvent.BUTTON3_MASK) == InputEvent.BUTTON3_MASK) { - PopupMenu popup = new PopupMenu("Annotations"); + PopupMenu popup = new PopupMenu( + MessageManager.getString("label.annotations")); MenuItem item = new MenuItem(ADDNEW); item.addActionListener(this); @@ -368,6 +479,32 @@ public class AnnotationLabels extends Panel implements ActionListener, item = new MenuItem(HIDE); item.addActionListener(this); popup.add(item); + + /* + * Hide all