X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAnnotationLabels.java;h=ce50cee9a54ab1575a2fd1e69e79b297aabb8bd2;hb=cf491d18e6affbfacfc67eda7c6bceedd457982f;hp=f2881889cf600ac72b569a81473d2197d30db63d;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java
index f288188..ce50cee 100755
--- a/src/jalview/appletgui/AnnotationLabels.java
+++ b/src/jalview/appletgui/AnnotationLabels.java
@@ -311,8 +311,8 @@ public class AnnotationLabels extends Panel implements ActionListener,
               .getSize(), f = ap.seqPanelHolder.getSize();
       int dif = evt.getY() - oldY;
 
-      dif /= ap.av.charHeight;
-      dif *= ap.av.charHeight;
+      dif /= ap.av.getCharHeight();
+      dif *= ap.av.getCharHeight();
 
       if ((d.height - dif) > 20 && (f.height + dif) > 20)
       {
@@ -482,7 +482,7 @@ public class AnnotationLabels extends Panel implements ActionListener,
                     MessageManager.getString("label.ignore_gaps_consensus"),
                     (aa[selectedRow].groupRef != null) ? aa[selectedRow].groupRef
                             .getIgnoreGapsConsensus() : ap.av
-                            .getIgnoreGapsConsensus());
+                            .isIgnoreGapsConsensus());
             final AlignmentAnnotation aaa = aa[selectedRow];
             cbmi.addItemListener(new ItemListener()
             {
@@ -495,7 +495,7 @@ public class AnnotationLabels extends Panel implements ActionListener,
                 }
                 else
                 {
-                  ap.av.setIgnoreGapsConsensus(cbmi.getState());
+                  ap.av.setIgnoreGapsConsensus(cbmi.getState(), ap);
                 }
                 ap.paintAlignment(true);
               }
@@ -813,7 +813,7 @@ public class AnnotationLabels extends Panel implements ActionListener,
               dragEvent.getY());
     }
 
-    if (!av.wrapAlignment && ((aa == null) || (aa.length < 1)))
+    if (!av.getWrapAlignment() && ((aa == null) || (aa.length < 1)))
     {
       g.setColor(Color.black);
       g.drawString(MessageManager.getString("label.right_click"), 2, 8);