X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAnnotationPanel.java;h=50bc184528985d27722ea8bc922a8ad598af8a1a;hb=65c62e3f2a1ec1a63b0fc58fdfaf249da27c2371;hp=88408bb609ad3e52fbbf009a4623b95e3adf4e8b;hpb=53507580ea0d347514d4f5e092a4d3d815609b9e;p=jalview.git

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index 88408bb..50bc184 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -439,7 +439,8 @@ public class AnnotationPanel extends Panel
       graphStretchY = evt.getY();
       av.calcPanelHeight();
       needValidating = true;
-      ap.paintAlignment(true);
+      // TODO: only update overview visible geometry
+      ap.paintAlignment(true, false);
     }
     else
     {
@@ -479,7 +480,7 @@ public class AnnotationPanel extends Panel
     if (av.hasHiddenColumns())
     {
       column = av.getAlignment().getHiddenColumns()
-              .adjustForHiddenColumns(column);
+              .visibleToAbsoluteColumn(column);
     }
 
     if (row > -1 && column < aa[row].annotations.length
@@ -782,5 +783,9 @@ public class AnnotationPanel extends Panel
       fastPaint(((int[]) evt.getNewValue())[0]
               - ((int[]) evt.getOldValue())[0]);
     }
+    else if (evt.getPropertyName().equals(ViewportRanges.MOVE_VIEWPORT))
+    {
+      repaint();
+    }
   }
 }