X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAnnotationPanel.java;h=c3f17f9caa8710cd538f40e14a927aab6556adc3;hb=8a6fa9ea9900d0f106529c3f6283e7f9d76dd2cb;hp=fdd727f749d8b006258e3da453c7b36164f97c25;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index fdd727f..c3f17f9 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -104,7 +104,7 @@ public class AnnotationPanel extends Panel implements AdjustmentListener,
   public void actionPerformed(ActionEvent evt)
   {
     AlignmentAnnotation[] aa = av.alignment.getAlignmentAnnotation();
-    if (aa==null)
+    if (aa == null)
     {
       return;
     }
@@ -329,7 +329,7 @@ public class AnnotationPanel extends Panel implements AdjustmentListener,
     if (needValidating)
     {
       ap.validate();
-      needValidating=false;
+      needValidating = false;
     }
     ap.scalePanel.mouseReleased(evt);
   }
@@ -337,7 +337,9 @@ public class AnnotationPanel extends Panel implements AdjustmentListener,
   public void mouseClicked(MouseEvent evt)
   {
   }
-  boolean needValidating=false;
+
+  boolean needValidating = false;
+
   public void mouseDragged(MouseEvent evt)
   {
     if (graphStretch > -1)
@@ -350,7 +352,7 @@ public class AnnotationPanel extends Panel implements AdjustmentListener,
       }
       graphStretchY = evt.getY();
       adjustPanelHeight();
-      needValidating=true;
+      needValidating = true;
       ap.paintAlignment(true);
     }
     else
@@ -453,7 +455,7 @@ public class AnnotationPanel extends Panel implements AdjustmentListener,
         height += aa[i].height;
       }
     }
-    if (height==0)
+    if (height == 0)
     {
       height = 20;
     }
@@ -697,9 +699,7 @@ public class AnnotationPanel extends Panel implements AdjustmentListener,
 
               if (v == column)
               {
-                g
-                        .fillRect(x * av.charWidth, y, av.charWidth,
-                                av.charHeight);
+                g.fillRect(x * av.charWidth, y, av.charWidth, av.charHeight);
               }
             }
           }
@@ -877,9 +877,7 @@ public class AnnotationPanel extends Panel implements AdjustmentListener,
           if (sCol == 0 || row.annotations[sCol - 1] == null
                   || row.annotations[sCol - 1].secondaryStructure != 'H')
           {
-            g
-                    .fillArc(lastSSX, y + 4 + iconOffset, av.charWidth, 8,
-                            90, 180);
+            g.fillArc(lastSSX, y + 4 + iconOffset, av.charWidth, 8, 90, 180);
             x1 += av.charWidth / 2;
           }