X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAnnotationRowFilter.java;h=641bfe27bcf459790d68db0ca98d05aae7d4541c;hb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;hp=b8e6bcb35ab5044834d684cb95dc94d5b08aaf82;hpb=a90e2fe3cc3b779521a81cf8de410936f3a777c1;p=jalview.git

diff --git a/src/jalview/appletgui/AnnotationRowFilter.java b/src/jalview/appletgui/AnnotationRowFilter.java
index b8e6bcb..641bfe2 100644
--- a/src/jalview/appletgui/AnnotationRowFilter.java
+++ b/src/jalview/appletgui/AnnotationRowFilter.java
@@ -85,45 +85,6 @@ public abstract class AnnotationRowFilter extends Panel
 
   }
 
-  public Vector getAnnotationItems(boolean isSeqAssociated)
-  {
-    Vector list = new Vector();
-    int index = 1;
-    int[] anmap = new int[av.getAlignment().getAlignmentAnnotation().length];
-    for (int i = 0; i < av.getAlignment().getAlignmentAnnotation().length; i++)
-    {
-      if (av.getAlignment().getAlignmentAnnotation()[i].sequenceRef == null)
-      {
-        if (isSeqAssociated)
-        {
-          continue;
-        }
-      }
-      else
-      {
-        enableSeqAss = true;
-      }
-      String label = av.getAlignment().getAlignmentAnnotation()[i].label;
-      if (!list.contains(label))
-      {
-        anmap[list.size()] = i;
-        list.add(label);
-
-      }
-      else
-      {
-        if (!isSeqAssociated)
-        {
-          anmap[list.size()] = i;
-          list.add(label + "_" + (index++));
-        }
-      }
-    }
-    this.annmap = new int[list.size()];
-    System.arraycopy(anmap, 0, this.annmap, 0, this.annmap.length);
-    return list;
-  }
-
   protected int getSelectedThresholdItem(int indexValue)
   {
     int selectedThresholdItem = -1;
@@ -186,11 +147,11 @@ public abstract class AnnotationRowFilter extends Panel
   protected void populateThresholdComboBox(Choice threshold)
   {
     threshold.addItem(MessageManager
-            .getString("label.threshold_feature_no_thereshold"));
+            .getString("label.threshold_feature_no_threshold"));
     threshold.addItem(MessageManager
-            .getString("label.threshold_feature_above_thereshold"));
+            .getString("label.threshold_feature_above_threshold"));
     threshold.addItem(MessageManager
-            .getString("label.threshold_feature_below_thereshold"));
+            .getString("label.threshold_feature_below_threshold"));
   }
 
   public jalview.datamodel.AlignmentAnnotation getCurrentAnnotation()