X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAppletJmol.java;h=cca9affe260e0a49fbdbc97fc4d2fe4a5734be29;hb=c932f0e85a8852824cdd8ce790af68682732c85c;hp=b0722c084a30cacb609f8f3bb4d3a4f2b04e3d38;hpb=8bcbf5c32f8091f2d5871e7eec4d4727c26d5c63;p=jalview.git

diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java
index b0722c0..cca9aff 100644
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -275,7 +275,7 @@ public class AppletJmol extends EmbmenuFrame implements
               "-applet", scriptWindow, null);
     } catch (Exception e)
     {
-      System.err.println(
+      jalview.bin.Console.errPrintln(
               "Couldn't create a jmol viewer. Args to allocate viewer were:\nDocumentBase="
                       + ap.av.applet.getDocumentBase() + "\nCodebase="
                       + ap.av.applet.getCodeBase());
@@ -320,7 +320,7 @@ public class AppletJmol extends EmbmenuFrame implements
           {
             if (jalview.bin.JalviewLite.debug)
             {
-              System.err.println(
+              jalview.bin.Console.errPrintln(
                       "AppletJmol:Trying to reuse existing PDBfile IO parser.");
             }
             // re-use the one we opened earlier
@@ -330,7 +330,7 @@ public class AppletJmol extends EmbmenuFrame implements
           {
             if (jalview.bin.JalviewLite.debug)
             {
-              System.err.println(
+              jalview.bin.Console.errPrintln(
                       "AppletJmol:Creating new PDBfile IO parser.");
             }
             FileParse fp = new FileParse(pdbentry.getFile(), protocol);
@@ -355,7 +355,7 @@ public class AppletJmol extends EmbmenuFrame implements
         } catch (Exception e)
         {
           // give up!
-          System.err.println("Couldn't access pdbentry id="
+          jalview.bin.Console.errPrintln("Couldn't access pdbentry id="
                   + pdbentry.getId() + " and file=" + pdbentry.getFile()
                   + " using protocol=" + protocol);
           e.printStackTrace();
@@ -433,7 +433,7 @@ public class AppletJmol extends EmbmenuFrame implements
       } catch (OutOfMemoryError ex)
       {
         frame.dispose();
-        System.err.println(
+        jalview.bin.Console.errPrintln(
                 "Out of memory when trying to create dialog box with sequence-structure mapping.");
         return;
       }