X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAppletJmol.java;h=f5ab5959e4d36d6834786d0d2a90b227996374d5;hb=e1a435a213f105bac3ea0258c6fe26f11df2a392;hp=3d1442d5ac1952ca7a536f8bd23f0f49a9d620a7;hpb=9811278f9e18ee6cb88470dbae98da046734a0af;p=jalview.git

diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java
index 3d1442d..f5ab595 100644
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -406,7 +406,8 @@ public class AppletJmol extends EmbmenuFrame implements
         }
       }
     }
-    jmb.centerViewer(toshow);
+    jmb.setChainsToShow(toshow);
+    jmb.centerViewer();
   }
 
   void closeViewer()