X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAppletJmolBinding.java;h=696a272ed7995927a5b24024b9547c3fb9404d48;hb=a5e22141bc3185284588761a69f023d527e7f18e;hp=636d2e0c075087148c2efcdf966aa851240c17fa;hpb=3207f84e04c66fc89da22ed04876e50b66e94649;p=jalview.git

diff --git a/src/jalview/appletgui/AppletJmolBinding.java b/src/jalview/appletgui/AppletJmolBinding.java
index 636d2e0..696a272 100644
--- a/src/jalview/appletgui/AppletJmolBinding.java
+++ b/src/jalview/appletgui/AppletJmolBinding.java
@@ -96,7 +96,7 @@ class AppletJmolBinding extends JalviewJmolBinding
   public void updateColours(Object source)
   {
     AlignmentPanel ap = (AlignmentPanel) source;
-    colourBySequence(ap);
+    colourBySequence(ap, ap.av.isShowSequenceFeatures());
   }
 
   @Override