X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAppletJmolBinding.java;h=696a272ed7995927a5b24024b9547c3fb9404d48;hb=a5e22141bc3185284588761a69f023d527e7f18e;hp=d5d53fb9afde49338316097f9bc539ba17649308;hpb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;p=jalview.git

diff --git a/src/jalview/appletgui/AppletJmolBinding.java b/src/jalview/appletgui/AppletJmolBinding.java
index d5d53fb..696a272 100644
--- a/src/jalview/appletgui/AppletJmolBinding.java
+++ b/src/jalview/appletgui/AppletJmolBinding.java
@@ -24,6 +24,7 @@ import jalview.api.AlignmentViewPanel;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JalviewJmolBinding;
+import jalview.gui.IProgressIndicator;
 import jalview.io.DataSourceType;
 import jalview.structure.StructureSelectionManager;
 
@@ -58,13 +59,6 @@ class AppletJmolBinding extends JalviewJmolBinding
   }
 
   @Override
-  public jalview.api.SequenceRenderer getSequenceRenderer(
-          AlignmentViewPanel alignment)
-  {
-    return new SequenceRenderer(((AlignmentPanel) alignment).av);
-  }
-
-  @Override
   public void sendConsoleEcho(String strEcho)
   {
     if (appletJmolBinding.scriptWindow == null)
@@ -102,7 +96,7 @@ class AppletJmolBinding extends JalviewJmolBinding
   public void updateColours(Object source)
   {
     AlignmentPanel ap = (AlignmentPanel) source;
-    colourBySequence(ap);
+    colourBySequence(ap, ap.av.isShowSequenceFeatures());
   }
 
   @Override
@@ -183,4 +177,11 @@ class AppletJmolBinding extends JalviewJmolBinding
     // TODO Auto-generated method stub
     return null;
   }
+
+  @Override
+  protected IProgressIndicator getIProgressIndicator()
+  {
+    // no progress indicators on the applet
+    return null;
+  }
 }