X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FCutAndPasteTransfer.java;h=2506752e4548389bcefabf63553077726168ac5a;hb=449db06a788539e8ea7463ff4b56f012280994d0;hp=b6e74603d82bd2fb2f573878b544bbdf54d247c9;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java
index b6e7460..2506752 100755
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -31,7 +31,7 @@ public class CutAndPasteTransfer
   boolean pdbImport = false;
   boolean treeImport = false;
   boolean annotationImport = false;
-  Sequence seq;
+  Sequence  seq;
   AlignFrame alignFrame;
 
   public CutAndPasteTransfer(boolean forImport, AlignFrame alignFrame)
@@ -123,9 +123,23 @@ public class CutAndPasteTransfer
 
     if (pdbImport)
     {
-      new MCview.AppletPDBViewer(text, AppletFormatAdapter.PASTE,
-                                 seq,
-                                 alignFrame.getSeqcanvas());
+      PDBEntry pdb = new PDBEntry();
+      pdb.setFile(text);
+
+      if ( alignFrame.alignPanel.av.applet.jmolAvailable )
+        new jalview.appletgui.AppletJmol(pdb,
+                                         new Sequence[]
+                                         {seq},
+                                         alignFrame.alignPanel,
+                                         AppletFormatAdapter.PASTE);
+      else
+
+        new MCview.AppletPDBViewer(pdb,
+                                   new Sequence[]
+                                   {seq},
+                                   alignFrame.alignPanel,
+                                   AppletFormatAdapter.PASTE);
+
     }
     else if (treeImport)
     {