X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FCutAndPasteTransfer.java;h=4b890bbf8e7d6ef8afbba593e39ea49b08d4ad6b;hb=c77ccc33971183dba9cb66b40886a6b61fe8eaa0;hp=f8c3756b2f3d6aff93c20663aec017846aaecfcf;hpb=8da7acff9214ddaf0e6d28e76219ab51bd38e62d;p=jalview.git

diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java
index f8c3756..4b890bb 100755
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -24,16 +24,23 @@ import java.awt.event.*;
 
 import jalview.datamodel.*;
 import jalview.io.*;
-import jalview.jbappletgui.*;
 
-public class CutAndPasteTransfer
-    extends GCutAndPasteTransfer
+public class CutAndPasteTransfer extends Panel implements ActionListener, MouseListener
 {
-  jalview.bin.JalviewLite applet;
-  public CutAndPasteTransfer(boolean forImport, jalview.bin.JalviewLite mainApplet)
+  boolean pdbImport = false;
+  boolean treeImport = false;
+  Sequence seq;
+  AlignFrame alignFrame;
+
+  public CutAndPasteTransfer(boolean forImport, AlignFrame alignFrame)
   {
-    super();
-    applet = mainApplet;
+    try {
+        jbInit();
+    } catch (Exception e) {
+        e.printStackTrace();
+    }
+
+    this.alignFrame = alignFrame;
 
     if (!forImport)
     {
@@ -51,7 +58,22 @@ public class CutAndPasteTransfer
     textarea.setText(text);
   }
 
-  protected void ok_actionPerformed(ActionEvent e)
+  public void setPDBImport(Sequence seq)
+  {
+    this.seq = seq;
+    pdbImport = true;
+  }
+
+
+  public void actionPerformed(ActionEvent evt)
+  {
+    if(evt.getSource()==ok)
+      ok_actionPerformed();
+    else if(evt.getSource()==cancel)
+      cancel_actionPerformed();
+  }
+
+  protected void ok_actionPerformed()
   {
     String text = getText();
     int length = text.length();
@@ -68,31 +90,95 @@ public class CutAndPasteTransfer
           +warning);
 
       textarea.setCaretPosition(text.length());
-      return;
     }
 
-    SequenceI[] sequences = null;
+    if(pdbImport)
+    {
+      new MCview.AppletPDBViewer(text, AppletFormatAdapter.PASTE,
+                                 seq,
+                                 alignFrame.getSeqcanvas());
+    }
+    else if(treeImport)
+    {
+      try{
+        jalview.io.NewickFile fin = new jalview.io.NewickFile(textarea.getText(),
+            "Paste");
 
-    String format = IdentifyFile.Identify(text, "Paste");
-    sequences = FormatAdapter.readFile(text, "Paste", format);
+        fin.parse();
+        if(fin.getTree()!=null)
+          alignFrame.loadTree(fin, "Pasted tree file");
 
-    if (sequences != null)
+      }
+      catch (Exception ex)
+      {
+        textarea.setText("Could not parse Newick file!\n" + ex);
+        return;
+      }
+    }
+    else if(alignFrame!=null)
     {
-      AlignFrame af = new AlignFrame(new Alignment(sequences), applet);
-      jalview.bin.JalviewLite.addFrame(af, "Cut & Paste input - " + format,
-                                       AlignFrame.NEW_WINDOW_WIDTH,
-                                       AlignFrame.NEW_WINDOW_HEIGHT);
-      af.statusBar.setText("Successfully pasted alignment file");
+      SequenceI[] sequences = null;
+
+      String format = new IdentifyFile().Identify(text, AppletFormatAdapter.PASTE);
+      try{
+        sequences = new AppletFormatAdapter().readFile(text, AppletFormatAdapter.PASTE, format);
+      }catch(java.io.IOException ex)
+      {
+        ex.printStackTrace();
+      }
+      if (sequences != null)
+      {
+        AlignFrame af = new AlignFrame(new Alignment(sequences), alignFrame.applet,
+                                       "Cut & Paste input - " + format,
+                                       false);
+        af.statusBar.setText("Successfully pasted alignment file");
+      }
     }
 
-    Frame frame = (Frame)this.getParent();
-    frame.setVisible(false);
+   if(this.getParent() instanceof Frame)
+    ((Frame)this.getParent()).setVisible(false);
+   else
+     ((Dialog)this.getParent()).setVisible(false);
   }
 
-  protected void cancel_actionPerformed(ActionEvent e)
+  protected void cancel_actionPerformed()
   {
-    Frame frame = (Frame)this.getParent();
-    frame.setVisible(false);
+    textarea.setText("");
+    if(this.getParent() instanceof Frame)
+     ((Frame)this.getParent()).setVisible(false);
+    else
+     ((Dialog)this.getParent()).setVisible(false);
   }
 
+  protected TextArea textarea = new TextArea();
+  Button ok = new Button();
+  Button cancel = new Button();
+  protected Panel buttonPanel = new Panel();
+  BorderLayout borderLayout1 = new BorderLayout();
+
+
+  private void jbInit() throws Exception {
+      textarea.setFont(new java.awt.Font("Monospaced", Font.PLAIN, 10));
+      textarea.setText("Paste your alignment file here");
+      textarea.addMouseListener(this);
+      this.setLayout(borderLayout1);
+      ok.setLabel("OK");
+      ok.addActionListener(this);
+      cancel.setLabel("Cancel");
+      cancel.addActionListener(this);
+      this.add(buttonPanel, BorderLayout.SOUTH);
+      buttonPanel.add(ok, null);
+      buttonPanel.add(cancel, null);
+      this.add(textarea, java.awt.BorderLayout.CENTER);
+  }
+
+  public void mousePressed(MouseEvent evt) {
+      if (textarea.getText().startsWith("Paste your")) {
+          textarea.setText("");
+     }
+  }
+  public void mouseReleased(MouseEvent evt){}
+  public void mouseClicked(MouseEvent evt){}
+  public void mouseEntered(MouseEvent evt){}
+  public void mouseExited(MouseEvent evt){}
 }