X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FCutAndPasteTransfer.java;h=535dc62a0d2bf2e393ee0b297e004f292ae6a090;hb=27f5f6fdfea52770ebd513c4607a6dde87821d48;hp=1fdbed89c6b8150d0866f5b0d4b88038e5eeecf6;hpb=15a454d6de78056c057ab64c5932dda788da979a;p=jalview.git

diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java
index 1fdbed8..535dc62 100644
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -23,7 +23,6 @@ package jalview.appletgui;
 import jalview.analysis.AlignmentUtils;
 import jalview.api.ComplexAlignFile;
 import jalview.bin.JalviewLite;
-import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.ColumnSelection;
 import jalview.datamodel.PDBEntry;
@@ -221,11 +220,11 @@ public class CutAndPasteTransfer extends Panel implements ActionListener,
   protected void loadAlignment(String text, boolean newWindow,
           AlignViewport viewport)
   {
-    Alignment al = null;
+    AlignmentI al = null;
 
     String format = new IdentifyFile().Identify(text,
             AppletFormatAdapter.PASTE);
-    AppletFormatAdapter afa = new AppletFormatAdapter(viewport);
+    AppletFormatAdapter afa = new AppletFormatAdapter(alignFrame.alignPanel);
     try
     {
       al = afa.readFile(text, AppletFormatAdapter.PASTE, format);
@@ -294,7 +293,7 @@ public class CutAndPasteTransfer extends Panel implements ActionListener,
    * @param al
    * @return
    */
-  protected boolean openSplitFrame(Alignment al, String format)
+  protected boolean openSplitFrame(AlignmentI al, String format)
   {
     final AlignmentI thisAlignment = this.alignFrame.getAlignViewport().getAlignment();
     if (thisAlignment.isNucleotide() == al.isNucleotide())