X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FCutAndPasteTransfer.java;h=6627e8884f754500b82d2045051a3fbe3ecaf076;hb=8359bd8f5bae0bfc1a63ba114b7a4d67fbb62efe;hp=ed89001789e9a7a36464a7a5a813d92ea080acfa;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java
index ed89001..6627e88 100755
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -29,9 +29,11 @@ import jalview.jbappletgui.*;
 public class CutAndPasteTransfer
     extends GCutAndPasteTransfer
 {
-  public CutAndPasteTransfer(boolean forImport)
+  jalview.bin.JalviewLite applet;
+  public CutAndPasteTransfer(boolean forImport, jalview.bin.JalviewLite mainApplet)
   {
     super();
+    applet = mainApplet;
 
     if (!forImport)
     {
@@ -52,17 +54,32 @@ public class CutAndPasteTransfer
   protected void ok_actionPerformed(ActionEvent e)
   {
     String text = getText();
+    int length = text.length();
+    textarea.append("\n");
+    if(textarea.getText().length()==length)
+    {
+      String warning = "\n\n#################################################\n"
+          +"WARNING!! THIS IS THE MAXIMUM SIZE OF TEXTAREA!!\n"
+          +"\nCAN'T INPUT FULL ALIGNMENT"
+          +"\n\nYOU MUST DELETE THIS WARNING TO CONTINUE"
+          +"\n\nMAKE SURE LAST SEQUENCE PASTED IS COMPLETE"
+          +"\n#################################################\n";
+      textarea.setText(text.substring(0, text.length()-warning.length())
+          +warning);
+
+      textarea.setCaretPosition(text.length());
+      return;
+    }
+
     SequenceI[] sequences = null;
 
     String format = IdentifyFile.Identify(text, "Paste");
-    sequences = FormatAdapter.readFile(text, "Paste", format);
+    sequences = new AppletFormatAdapter().readFile(text, "Paste", format);
 
     if (sequences != null)
     {
-      AlignFrame af = new AlignFrame(new Alignment(sequences));
-      jalview.bin.JalviewLite.addFrame(af, "Cut & Paste input - " + format,
-                                       AlignFrame.NEW_WINDOW_WIDTH,
-                                       AlignFrame.NEW_WINDOW_HEIGHT);
+      AlignFrame af = new AlignFrame(new Alignment(sequences), applet,
+                                     "Cut & Paste input - " + format);
       af.statusBar.setText("Successfully pasted alignment file");
     }