X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FCutAndPasteTransfer.java;h=6627e8884f754500b82d2045051a3fbe3ecaf076;hb=a28c9340eeadfdaa551a21b9dea1d0f1530126e3;hp=46f3d701fdcd9fd3be30d3dbaf80885a88b00f0f;hpb=fa01b399367489ceab50514c8ca4e516e5ec417a;p=jalview.git

diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java
index 46f3d70..6627e88 100755
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -29,9 +29,11 @@ import jalview.jbappletgui.*;
 public class CutAndPasteTransfer
     extends GCutAndPasteTransfer
 {
-  public CutAndPasteTransfer(boolean forImport)
+  jalview.bin.JalviewLite applet;
+  public CutAndPasteTransfer(boolean forImport, jalview.bin.JalviewLite mainApplet)
   {
     super();
+    applet = mainApplet;
 
     if (!forImport)
     {
@@ -72,14 +74,12 @@ public class CutAndPasteTransfer
     SequenceI[] sequences = null;
 
     String format = IdentifyFile.Identify(text, "Paste");
-    sequences = FormatAdapter.readFile(text, "Paste", format);
+    sequences = new AppletFormatAdapter().readFile(text, "Paste", format);
 
     if (sequences != null)
     {
-      AlignFrame af = new AlignFrame(new Alignment(sequences));
-      jalview.bin.JalviewLite.addFrame(af, "Cut & Paste input - " + format,
-                                       AlignFrame.NEW_WINDOW_WIDTH,
-                                       AlignFrame.NEW_WINDOW_HEIGHT);
+      AlignFrame af = new AlignFrame(new Alignment(sequences), applet,
+                                     "Cut & Paste input - " + format);
       af.statusBar.setText("Successfully pasted alignment file");
     }