X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FExtJmol.java;h=6389250ee646e5c87345bd26588f21e5e01a3da7;hb=5002a0f587ac8f1c18117e29bb4be2754743afc2;hp=705b5109602b2c6d4c95553efb5d3caf43f46193;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git
diff --git a/src/jalview/appletgui/ExtJmol.java b/src/jalview/appletgui/ExtJmol.java
index 705b510..6389250 100644
--- a/src/jalview/appletgui/ExtJmol.java
+++ b/src/jalview/appletgui/ExtJmol.java
@@ -1,19 +1,22 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
@@ -28,7 +31,6 @@ import org.jmol.api.JmolViewer;
import jalview.api.AlignmentViewPanel;
import jalview.api.FeatureRenderer;
import jalview.api.SequenceRenderer;
-import jalview.datamodel.AlignmentI;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JalviewJmolBinding;
@@ -48,7 +50,8 @@ public class ExtJmol extends JalviewJmolBinding
PDBEntry[] pdbentry, SequenceI[][] seq, String[][] chains,
String protocol)
{
- super(alframe.alignPanel.getStructureSelectionManager(), pdbentry, seq, chains, protocol);
+ super(alframe.alignPanel.getStructureSelectionManager(), pdbentry, seq,
+ chains, protocol);
}
public ExtJmol(JmolViewer viewer, AlignmentPanel alignPanel,
@@ -74,7 +77,7 @@ public class ExtJmol extends JalviewJmolBinding
public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
{
- AlignmentPanel ap = (AlignmentPanel)alignment;
+ AlignmentPanel ap = (AlignmentPanel) alignment;
if (ap.av.showSequenceFeatures)
{
return ap.getFeatureRenderer();
@@ -87,7 +90,7 @@ public class ExtJmol extends JalviewJmolBinding
public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
{
- return ((AlignmentPanel)alignment).getSequenceRenderer();
+ return ((AlignmentPanel) alignment).getSequenceRenderer();
}
public void notifyScriptTermination(String strStatus, int msWalltime)
@@ -189,7 +192,7 @@ public class ExtJmol extends JalviewJmolBinding
public void releaseReferences(Object svl)
{
// TODO Auto-generated method stub
-
+
}
}