X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FExtJmol.java;h=aaab8bda6af2a4b3225686ef7c21eca5c16f3037;hb=28a4f823a8d3e6eae1a4569d8022c5a20fd0e3c7;hp=b3d1a3cb2a944d0296030ddb9536ff185ae2ce8f;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git

diff --git a/src/jalview/appletgui/ExtJmol.java b/src/jalview/appletgui/ExtJmol.java
index b3d1a3c..aaab8bd 100644
--- a/src/jalview/appletgui/ExtJmol.java
+++ b/src/jalview/appletgui/ExtJmol.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -28,7 +28,6 @@ import org.jmol.api.JmolViewer;
 import jalview.api.AlignmentViewPanel;
 import jalview.api.FeatureRenderer;
 import jalview.api.SequenceRenderer;
-import jalview.datamodel.AlignmentI;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JalviewJmolBinding;
@@ -48,7 +47,8 @@ public class ExtJmol extends JalviewJmolBinding
           PDBEntry[] pdbentry, SequenceI[][] seq, String[][] chains,
           String protocol)
   {
-    super(alframe.alignPanel.getStructureSelectionManager(), pdbentry, seq, chains, protocol);
+    super(alframe.alignPanel.getStructureSelectionManager(), pdbentry, seq,
+            chains, protocol);
   }
 
   public ExtJmol(JmolViewer viewer, AlignmentPanel alignPanel,
@@ -74,7 +74,7 @@ public class ExtJmol extends JalviewJmolBinding
 
   public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
   {
-    AlignmentPanel ap = (AlignmentPanel)alignment;
+    AlignmentPanel ap = (AlignmentPanel) alignment;
     if (ap.av.showSequenceFeatures)
     {
       return ap.getFeatureRenderer();
@@ -87,7 +87,7 @@ public class ExtJmol extends JalviewJmolBinding
 
   public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
   {
-    return ((AlignmentPanel)alignment).getSequenceRenderer();
+    return ((AlignmentPanel) alignment).getSequenceRenderer();
   }
 
   public void notifyScriptTermination(String strStatus, int msWalltime)
@@ -189,7 +189,7 @@ public class ExtJmol extends JalviewJmolBinding
   public void releaseReferences(Object svl)
   {
     // TODO Auto-generated method stub
-    
+
   }
 
 }