X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FExtJmol.java;h=be30b494a070d0ff69f7f62751edfa1527f05b47;hb=545a83a3607f98d0a1337cdf5954d6215be8cf94;hp=3966536cc63f35171dfd44f5c6d5552f0a0e525b;hpb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;p=jalview.git

diff --git a/src/jalview/appletgui/ExtJmol.java b/src/jalview/appletgui/ExtJmol.java
index 3966536..be30b49 100644
--- a/src/jalview/appletgui/ExtJmol.java
+++ b/src/jalview/appletgui/ExtJmol.java
@@ -26,6 +26,7 @@ import jalview.api.SequenceRenderer;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JalviewJmolBinding;
+import jalview.gui.IProgressIndicator;
 import jalview.io.DataSourceType;
 
 import java.awt.Container;
@@ -35,7 +36,7 @@ import java.util.Map;
 import java.util.Vector;
 
 import org.jmol.api.JmolAppConsoleInterface;
-import org.jmol.java.BS;
+import javajs.util.BS;
 import org.jmol.viewer.Viewer;
 
 /**
@@ -65,6 +66,13 @@ public class ExtJmol extends JalviewJmolBinding
   }
 
   @Override
+  protected IProgressIndicator getIProgressIndicator()
+  {
+    // no progress indicators on applet (could access javascript for this)
+    return null;
+  }
+
+  @Override
   public void updateColours(Object source)
   {
 
@@ -92,6 +100,7 @@ public class ExtJmol extends JalviewJmolBinding
     }
   }
 
+
   @Override
   public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
   {
@@ -137,8 +146,8 @@ public class ExtJmol extends JalviewJmolBinding
   @Override
   public void refreshPdbEntries()
   {
-    List<PDBEntry> pdbe = new ArrayList<PDBEntry>();
-    List<String> fileids = new ArrayList<String>();
+    List<PDBEntry> pdbe = new ArrayList<>();
+    List<String> fileids = new ArrayList<>();
     SequenceI[] sq = ap.av.getAlignment().getSequencesArray();
     for (int s = 0; s < sq.length; s++)
     {