X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFeatureColourChooser.java;h=0e85017e181448d04f4b178b65c1b3cd6a77c5d9;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=798f56413b4a4a90f394d3ff76ed33edbb9ca401;hpb=25aaaa87042b3f507ad4348120df7dd073182759;p=jalview.git diff --git a/src/jalview/appletgui/FeatureColourChooser.java b/src/jalview/appletgui/FeatureColourChooser.java index 798f564..0e85017 100644 --- a/src/jalview/appletgui/FeatureColourChooser.java +++ b/src/jalview/appletgui/FeatureColourChooser.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,15 +20,34 @@ */ package jalview.appletgui; -import java.util.*; - -import java.awt.*; -import java.awt.event.*; - -import jalview.datamodel.*; -import jalview.schemes.*; +import jalview.api.FeatureColourI; +import jalview.datamodel.GraphLine; +import jalview.schemes.AnnotationColourGradient; +import jalview.schemes.FeatureColour; import jalview.util.MessageManager; +import java.awt.Checkbox; +import java.awt.Choice; +import java.awt.Color; +import java.awt.Dimension; +import java.awt.FlowLayout; +import java.awt.Font; +import java.awt.Frame; +import java.awt.GridLayout; +import java.awt.Label; +import java.awt.Panel; +import java.awt.Scrollbar; +import java.awt.TextField; +import java.awt.event.ActionEvent; +import java.awt.event.ActionListener; +import java.awt.event.AdjustmentEvent; +import java.awt.event.AdjustmentListener; +import java.awt.event.ItemEvent; +import java.awt.event.ItemListener; +import java.awt.event.MouseEvent; +import java.awt.event.MouseListener; +import java.util.Hashtable; + public class FeatureColourChooser extends Panel implements ActionListener, AdjustmentListener, ItemListener, MouseListener { @@ -42,9 +61,9 @@ public class FeatureColourChooser extends Panel implements ActionListener, // AlignmentPanel ap; - GraduatedColor cs; + FeatureColourI cs; - Object oldcs; + FeatureColourI oldcs; Hashtable oldgroupColours; @@ -73,29 +92,29 @@ public class FeatureColourChooser extends Panel implements ActionListener, { this.type = type; fr = frenderer; - float mm[] = ((float[][]) fr.getMinMax().get(type))[0]; + float mm[] = fr.getMinMax().get(type)[0]; min = mm[0]; max = mm[1]; oldcs = fr.getFeatureColours().get(type); - if (oldcs instanceof GraduatedColor) + if (oldcs.isGraduatedColour()) { - cs = new GraduatedColor((GraduatedColor) oldcs, min, max); + cs = new FeatureColour((FeatureColour) oldcs, min, max); } else { // promote original color to a graduated color Color bl = Color.black; - if (oldcs instanceof Color) + if (oldcs.isSimpleColour()) { - bl = (Color) oldcs; + bl = oldcs.getColour(); } // original colour becomes the maximum colour - cs = new GraduatedColor(Color.white, bl, mm[0], mm[1]); + cs = new FeatureColour(Color.white, bl, mm[0], mm[1]); } - minColour.setBackground(cs.getMinColor()); - maxColour.setBackground(cs.getMaxColor()); - minColour.setForeground(cs.getMinColor()); - maxColour.setForeground(cs.getMaxColor()); + minColour.setBackground(cs.getMinColour()); + maxColour.setBackground(cs.getMaxColour()); + minColour.setForeground(cs.getMinColour()); + maxColour.setForeground(cs.getMaxColour()); colourFromLabel.setState(cs.isColourByLabel()); adjusting = true; @@ -105,10 +124,8 @@ public class FeatureColourChooser extends Panel implements ActionListener, } catch (Exception ex) { } - threshold - .select(cs.getThreshType() == AnnotationColourGradient.NO_THRESHOLD ? 0 - : cs.getThreshType() == AnnotationColourGradient.ABOVE_THRESHOLD ? 1 - : 2); + threshold.select(cs.isAboveThreshold() ? 1 : (cs.isBelowThreshold() ? 2 + : 0)); adjusting = false; changeColour(); @@ -117,8 +134,8 @@ public class FeatureColourChooser extends Panel implements ActionListener, slider.addMouseListener(this); owner = (af != null) ? af : fs.frame; frame = new JVDialog(owner, MessageManager.formatMessage( - "label.graduated_color_for_params", new String[] - { type }), true, 480, 248); + "label.graduated_color_for_params", new String[] { type }), + true, 480, 248); frame.setMainPanel(this); validate(); frame.setVisible(true); @@ -174,11 +191,11 @@ public class FeatureColourChooser extends Panel implements ActionListener, jPanel4.setBackground(Color.white); threshold.addItemListener(this); threshold.addItem(MessageManager - .getString("label.threshold_feature_no_thereshold")); + .getString("label.threshold_feature_no_threshold")); threshold.addItem(MessageManager - .getString("label.threshold_feature_above_thereshold")); + .getString("label.threshold_feature_above_threshold")); threshold.addItem(MessageManager - .getString("label.threshold_feature_below_thereshold")); + .getString("label.threshold_feature_below_threshold")); thresholdValue.addActionListener(this); slider.setBackground(Color.white); slider.setEnabled(false); @@ -241,6 +258,7 @@ public class FeatureColourChooser extends Panel implements ActionListener, private GraphLine threshline; + @Override public void actionPerformed(ActionEvent evt) { if (evt.getSource() == thresholdValue) @@ -268,6 +286,7 @@ public class FeatureColourChooser extends Panel implements ActionListener, } } + @Override public void itemStateChanged(ItemEvent evt) { maxColour.setEnabled(!colourFromLabel.getState()); @@ -275,19 +294,20 @@ public class FeatureColourChooser extends Panel implements ActionListener, changeColour(); } + @Override public void adjustmentValueChanged(AdjustmentEvent evt) { if (!adjusting) { - thresholdValue.setText(((float) slider.getValue() / 1000f) + ""); + thresholdValue.setText((slider.getValue() / 1000f) + ""); valueChanged(); } } protected void valueChanged() { - threshline.value = (float) slider.getValue() / 1000f; - cs.setThresh(threshline.value); + threshline.value = slider.getValue() / 1000f; + cs.setThreshold(threshline.value); changeColour(); PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId()); // ap.paintAlignment(false); @@ -351,7 +371,7 @@ public class FeatureColourChooser extends Panel implements ActionListener, slider.setEnabled(true); thresholdValue.setEnabled(true); - GraduatedColor acg = new GraduatedColor(minColour.getBackground(), + FeatureColour acg = new FeatureColour(minColour.getBackground(), maxColour.getBackground(), min, max); acg.setColourByLabel(colourFromLabel.getState()); @@ -375,7 +395,7 @@ public class FeatureColourChooser extends Panel implements ActionListener, if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD) { adjusting = true; - acg.setThresh(threshline.value); + acg.setThreshold(threshline.value); float range = max * 1000f - min * 1000f; @@ -388,17 +408,17 @@ public class FeatureColourChooser extends Panel implements ActionListener, adjusting = false; } - acg.setThreshType(aboveThreshold); + acg.setAboveThreshold(true); if (thresholdIsMin.getState() && aboveThreshold != AnnotationColourGradient.NO_THRESHOLD) { if (aboveThreshold == AnnotationColourGradient.ABOVE_THRESHOLD) { - acg = new GraduatedColor(acg, threshline.value, max); + acg = new FeatureColour(acg, threshline.value, max); } else { - acg = new GraduatedColor(acg, min, threshline.value); + acg = new FeatureColour(acg, min, threshline.value); } } @@ -416,14 +436,17 @@ public class FeatureColourChooser extends Panel implements ActionListener, } + @Override public void mouseClicked(MouseEvent evt) { } + @Override public void mousePressed(MouseEvent evt) { } + @Override public void mouseReleased(MouseEvent evt) { if (evt.getSource() == minColour || evt.getSource() == maxColour) @@ -438,10 +461,12 @@ public class FeatureColourChooser extends Panel implements ActionListener, // ap.paintAlignment(true); } + @Override public void mouseEntered(MouseEvent evt) { } + @Override public void mouseExited(MouseEvent evt) { }