X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFeatureColourChooser.java;h=0e85017e181448d04f4b178b65c1b3cd6a77c5d9;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=e3ab8eb1146e61bc27ebe55ccf38886a3215dcfa;hpb=262352d44a49e6102a9e80b0c006ea9331ed0c67;p=jalview.git diff --git a/src/jalview/appletgui/FeatureColourChooser.java b/src/jalview/appletgui/FeatureColourChooser.java index e3ab8eb..0e85017 100644 --- a/src/jalview/appletgui/FeatureColourChooser.java +++ b/src/jalview/appletgui/FeatureColourChooser.java @@ -1,85 +1,120 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1) - * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. + * This file is part of Jalview. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.appletgui; -import java.util.*; - -import java.awt.*; -import java.awt.event.*; - -import jalview.datamodel.*; -import jalview.schemes.*; -import java.awt.Rectangle; - -public class FeatureColourChooser extends Panel implements - ActionListener, AdjustmentListener, ItemListener, MouseListener +import jalview.api.FeatureColourI; +import jalview.datamodel.GraphLine; +import jalview.schemes.AnnotationColourGradient; +import jalview.schemes.FeatureColour; +import jalview.util.MessageManager; + +import java.awt.Checkbox; +import java.awt.Choice; +import java.awt.Color; +import java.awt.Dimension; +import java.awt.FlowLayout; +import java.awt.Font; +import java.awt.Frame; +import java.awt.GridLayout; +import java.awt.Label; +import java.awt.Panel; +import java.awt.Scrollbar; +import java.awt.TextField; +import java.awt.event.ActionEvent; +import java.awt.event.ActionListener; +import java.awt.event.AdjustmentEvent; +import java.awt.event.AdjustmentListener; +import java.awt.event.ItemEvent; +import java.awt.event.ItemListener; +import java.awt.event.MouseEvent; +import java.awt.event.MouseListener; +import java.util.Hashtable; + +public class FeatureColourChooser extends Panel implements ActionListener, + AdjustmentListener, ItemListener, MouseListener { JVDialog frame; + Frame owner; + FeatureRenderer fr; + FeatureSettings fs = null; + // AlignmentPanel ap; - GraduatedColor cs; - Object oldcs; + FeatureColourI cs; - Hashtable oldgroupColours; + FeatureColourI oldcs; + Hashtable oldgroupColours; boolean adjusting = false; - private float min,max; - String type=null; - private AlignFrame af=null; + private float min, max; + + String type = null; + + private AlignFrame af = null; + public FeatureColourChooser(AlignFrame af, String type) { this.af = af; init(af.getSeqcanvas().getFeatureRenderer(), type); } + public FeatureColourChooser(FeatureSettings fsettings, String type) { this.fs = fsettings; init(fsettings.fr, type); // this.ap = fsettings.ap; } - private void init(FeatureRenderer frenderer,String type) { + + private void init(FeatureRenderer frenderer, String type) + { this.type = type; fr = frenderer; - float mm[] = ((float[][]) fr.minmax.get(type))[0]; + float mm[] = fr.getMinMax().get(type)[0]; min = mm[0]; max = mm[1]; - oldcs = fr.featureColours.get(type); - if (oldcs instanceof GraduatedColor) + oldcs = fr.getFeatureColours().get(type); + if (oldcs.isGraduatedColour()) + { + cs = new FeatureColour((FeatureColour) oldcs, min, max); + } + else { - cs = new GraduatedColor((GraduatedColor) oldcs, min, max); - } else { // promote original color to a graduated color Color bl = Color.black; - if (oldcs instanceof Color) + if (oldcs.isSimpleColour()) { - bl = (Color) oldcs; + bl = oldcs.getColour(); } // original colour becomes the maximum colour - cs = new GraduatedColor(Color.white,bl,mm[0],mm[1]); + cs = new FeatureColour(Color.white, bl, mm[0], mm[1]); } - minColour.setBackground(cs.getMinColor()); - maxColour.setBackground(cs.getMaxColor()); + minColour.setBackground(cs.getMinColour()); + maxColour.setBackground(cs.getMaxColour()); + minColour.setForeground(cs.getMinColour()); + maxColour.setForeground(cs.getMaxColour()); colourFromLabel.setState(cs.isColourByLabel()); adjusting = true; @@ -89,25 +124,31 @@ public class FeatureColourChooser extends Panel implements } catch (Exception ex) { } - threshold.select(cs.getThreshType()==AnnotationColourGradient.NO_THRESHOLD ? 0 : cs.getThreshType() == AnnotationColourGradient.ABOVE_THRESHOLD ? 1 : 2); - + threshold.select(cs.isAboveThreshold() ? 1 : (cs.isBelowThreshold() ? 2 + : 0)); + adjusting = false; changeColour(); colourFromLabel.addItemListener(this); slider.addAdjustmentListener(this); slider.addMouseListener(this); - Frame owner = (af!=null) ? af : fs.frame; - frame = new JVDialog(owner,"Graduated Feature Colour for "+type,true,480,248); + owner = (af != null) ? af : fs.frame; + frame = new JVDialog(owner, MessageManager.formatMessage( + "label.graduated_color_for_params", new String[] { type }), + true, 480, 248); frame.setMainPanel(this); validate(); frame.setVisible(true); - if (frame.accept) { + if (frame.accept) + { changeColour(); - } else { + } + else + { // cancel - reset(); - PaintRefresher.Refresh(this, fr.av.getSequenceSetId()); - frame.setVisible(false); + reset(); + PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId()); + frame.setVisible(false); } } @@ -124,63 +165,77 @@ public class FeatureColourChooser extends Panel implements private void jbInit() throws Exception { - minColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - minColour.setLabel("Min Colour"); - minColour.addActionListener(this); + Label minLabel = new Label(MessageManager.getString("label.min")), maxLabel = new Label( + MessageManager.getString("label.max")); + minLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + maxLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + // minColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + // minColour.setLabel("Min Colour"); + + minColour.setBounds(0, 0, 40, 27); + maxColour.setBounds(0, 0, 40, 27); + minColour.addMouseListener(this); maxColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - maxColour.setLabel("Max Colour"); - maxColour.addActionListener(this); + maxColour.addMouseListener(this); thresholdIsMin.addItemListener(this); - this.setLayout(new GridLayout(4,1)); + this.setLayout(new GridLayout(4, 1)); jPanel1.setLayout(new FlowLayout()); jPanel2.setLayout(new FlowLayout()); - jPanel3.setLayout(new GridLayout(1,1)); + jPanel3.setLayout(new GridLayout(1, 1)); jPanel4.setLayout(new FlowLayout()); jPanel1.setBackground(Color.white); jPanel2.setBackground(Color.white); jPanel4.setBackground(Color.white); threshold.addItemListener(this); - threshold.addItem("No Threshold"); - threshold.addItem("Above Threshold"); - threshold.addItem("Below Threshold"); + threshold.addItem(MessageManager + .getString("label.threshold_feature_no_threshold")); + threshold.addItem(MessageManager + .getString("label.threshold_feature_above_threshold")); + threshold.addItem(MessageManager + .getString("label.threshold_feature_below_threshold")); thresholdValue.addActionListener(this); slider.setBackground(Color.white); slider.setEnabled(false); slider.setSize(new Dimension(93, 21)); thresholdValue.setEnabled(false); - thresholdValue.setSize(new Dimension(79,22)); //setBounds(new Rectangle(248, 2, 79, 22)); + thresholdValue.setSize(new Dimension(79, 22)); // setBounds(new + // Rectangle(248, 2, 79, + // 22)); thresholdValue.setColumns(5); jPanel3.setBackground(Color.white); - + colourFromLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - colourFromLabel.setLabel("Colour by Label"); - colourFromLabel.setSize(new Dimension(139,22)); - //threshold.setBounds(new Rectangle(11, 3, 139, 22)); + colourFromLabel.setLabel(MessageManager + .getString("label.colour_by_label")); + colourFromLabel.setSize(new Dimension(139, 22)); + // threshold.setBounds(new Rectangle(11, 3, 139, 22)); thresholdIsMin.setBackground(Color.white); - thresholdIsMin.setLabel("Threshold is min/max"); - thresholdIsMin.setSize(new Dimension(135,23)); - //thresholdIsMin.setBounds(new Rectangle(328, 3, 135, 23)); + thresholdIsMin.setLabel(MessageManager + .getString("label.threshold_minmax")); + thresholdIsMin.setSize(new Dimension(135, 23)); + // thresholdIsMin.setBounds(new Rectangle(328, 3, 135, 23)); + jPanel1.add(minLabel); jPanel1.add(minColour); + jPanel1.add(maxLabel); jPanel1.add(maxColour); jPanel1.add(colourFromLabel); jPanel2.add(threshold); jPanel3.add(slider); jPanel4.add(thresholdValue); jPanel4.add(thresholdIsMin); - this.add(jPanel1);//, java.awt.BorderLayout.NORTH); - this.add(jPanel2);//, java.awt.BorderLayout.NORTH); - this.add(jPanel3);//, java.awt.BorderLayout.CENTER); - this.add(jPanel4);//, java.awt.BorderLayout.CENTER); + this.add(jPanel1);// , java.awt.BorderLayout.NORTH); + this.add(jPanel2);// , java.awt.BorderLayout.NORTH); + this.add(jPanel3);// , java.awt.BorderLayout.CENTER); + this.add(jPanel4);// , java.awt.BorderLayout.CENTER); } - Button minColour = new Button(); + Panel minColour = new Panel(); - Button maxColour = new Button(); + Panel maxColour = new Panel(); - Panel jPanel1 = new Panel(); Panel jPanel2 = new Panel(); @@ -188,20 +243,22 @@ public class FeatureColourChooser extends Panel implements Choice threshold = new Choice(); Panel jPanel3 = new Panel(); + Panel jPanel4 = new Panel(); Scrollbar slider = new Scrollbar(Scrollbar.HORIZONTAL); TextField thresholdValue = new TextField(20); - -// BorderLayout borderLayout1 = new BorderLayout(); + // BorderLayout borderLayout1 = new BorderLayout(); Checkbox thresholdIsMin = new Checkbox(); + Checkbox colourFromLabel = new Checkbox(); private GraphLine threshline; + @Override public void actionPerformed(ActionEvent evt) { if (evt.getSource() == thresholdValue) @@ -229,6 +286,7 @@ public class FeatureColourChooser extends Panel implements } } + @Override public void itemStateChanged(ItemEvent evt) { maxColour.setEnabled(!colourFromLabel.getState()); @@ -236,41 +294,58 @@ public class FeatureColourChooser extends Panel implements changeColour(); } + @Override public void adjustmentValueChanged(AdjustmentEvent evt) { if (!adjusting) { - thresholdValue.setText(((float) slider.getValue() / 1000f) + ""); + thresholdValue.setText((slider.getValue() / 1000f) + ""); valueChanged(); } } - protected void valueChanged() { - threshline.value = (float) slider.getValue() / 1000f; - cs.setThresh(threshline.value); + + protected void valueChanged() + { + threshline.value = slider.getValue() / 1000f; + cs.setThreshold(threshline.value); changeColour(); - PaintRefresher.Refresh(this, fr.av.getSequenceSetId()); + PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId()); // ap.paintAlignment(false); } + public void minColour_actionPerformed(Color newCol) { if (newCol == null) { - UserDefinedColours udc = new UserDefinedColours(this,minColour.getBackground(), frame, "Select Colour for Minimum Value"); - } else { + UserDefinedColours udc = new UserDefinedColours(this, + minColour.getBackground(), owner, + MessageManager.getString("label.select_colour_minimum_value")); // frame.owner, + } + else + { minColour.setBackground(newCol); + minColour.setForeground(newCol); minColour.repaint(); changeColour(); } - + } public void maxColour_actionPerformed(Color newCol) { if (newCol == null) { - UserDefinedColours udc = new UserDefinedColours(this,maxColour.getBackground(), frame, "Select Colour for Maximum Value");// this, "Select Colour for Maximum Value", maxColour.getBackground()); - } else { + + // UserDefinedColours udc = new UserDefinedColours(this, + // "Select Colour for Maximum Value",maxColour.getBackground(),true); + UserDefinedColours udc = new UserDefinedColours(this, + maxColour.getBackground(), owner, + MessageManager.getString("label.select_colour_maximum_value")); + } + else + { maxColour.setBackground(newCol); + maxColour.setForeground(newCol); maxColour.repaint(); changeColour(); } @@ -285,18 +360,19 @@ public class FeatureColourChooser extends Panel implements } int aboveThreshold = AnnotationColourGradient.NO_THRESHOLD; - if (threshold.getSelectedItem().equals("Above Threshold")) + if (threshold.getSelectedIndex() == 1) { aboveThreshold = AnnotationColourGradient.ABOVE_THRESHOLD; } - else if (threshold.getSelectedItem().equals("Below Threshold")) + else if (threshold.getSelectedIndex() == 2) { aboveThreshold = AnnotationColourGradient.BELOW_THRESHOLD; } slider.setEnabled(true); thresholdValue.setEnabled(true); - GraduatedColor acg = new GraduatedColor(minColour.getBackground(), maxColour.getBackground(), min, max); + FeatureColour acg = new FeatureColour(minColour.getBackground(), + maxColour.getBackground(), min, max); acg.setColourByLabel(colourFromLabel.getState()); maxColour.setEnabled(!colourFromLabel.getState()); @@ -307,23 +383,21 @@ public class FeatureColourChooser extends Panel implements thresholdValue.setEnabled(false); thresholdValue.setText(""); } - + else if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD && threshline == null) { // todo visual indication of feature threshold - threshline = new jalview.datamodel.GraphLine( - (max - min) / 2f, - "Threshold", Color.black); + threshline = new jalview.datamodel.GraphLine((max - min) / 2f, + "Threshold", Color.black); } if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD) { adjusting = true; - acg.setThresh(threshline.value); + acg.setThreshold(threshline.value); - float range = max * 1000f - - min * 1000f; + float range = max * 1000f - min * 1000f; slider.setMinimum((int) (min * 1000)); slider.setMaximum((int) (max * 1000)); @@ -334,49 +408,65 @@ public class FeatureColourChooser extends Panel implements adjusting = false; } - acg.setThreshType(aboveThreshold); - if (thresholdIsMin.getState() && aboveThreshold != AnnotationColourGradient.NO_THRESHOLD) + acg.setAboveThreshold(true); + if (thresholdIsMin.getState() + && aboveThreshold != AnnotationColourGradient.NO_THRESHOLD) { - if (aboveThreshold==AnnotationColourGradient.ABOVE_THRESHOLD) - { - acg = new GraduatedColor(acg, threshline.value, max); - } else { - acg = new GraduatedColor(acg, min,threshline.value); + if (aboveThreshold == AnnotationColourGradient.ABOVE_THRESHOLD) + { + acg = new FeatureColour(acg, threshline.value, max); + } + else + { + acg = new FeatureColour(acg, min, threshline.value); } } - - fr.featureColours.put(type,acg); + + fr.setColour(type, acg); cs = acg; - PaintRefresher.Refresh(this, fr.av.getSequenceSetId()); + PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId()); // ap.paintAlignment(false); } void reset() { - fr.featureColours.put(type, oldcs); - PaintRefresher.Refresh(this, fr.av.getSequenceSetId()); + fr.setColour(type, oldcs); + PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId()); // ap.paintAlignment(true); } + @Override public void mouseClicked(MouseEvent evt) { } + @Override public void mousePressed(MouseEvent evt) { } + @Override public void mouseReleased(MouseEvent evt) { - PaintRefresher.Refresh(this, fr.av.getSequenceSetId()); + if (evt.getSource() == minColour || evt.getSource() == maxColour) + { + // relay the event + actionPerformed(new ActionEvent(evt.getSource(), 1, "Clicked")); + } + else + { + PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId()); + } // ap.paintAlignment(true); } + @Override public void mouseEntered(MouseEvent evt) { } + @Override public void mouseExited(MouseEvent evt) { }