X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFeatureRenderer.java;h=47fbb0db946cd166180af6bfa632685f812c134d;hb=4756b29312ca78d0975248c65e50157399e6ce39;hp=d49fdc430fb0eb2ab3181da0e730ead91858d4c5;hpb=174230b4233d9ce80f94527768d2cd2f76da11ab;p=jalview.git

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index d49fdc4..47fbb0d 100755
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -293,7 +293,7 @@ public class FeatureRenderer
 
           for (i = fstart; i <= fend; i++)
           {
-            s = seq.getSequence().charAt(i);
+            s = seq.getCharAt(i);
 
             if (jalview.util.Comparison.isGap(s))
             {
@@ -412,8 +412,8 @@ public class FeatureRenderer
   {
     void setTransparency(Graphics g, float value)
     {
-   /*  Graphics2D g2 = (Graphics2D) g;
- g2.setComposite(
+    /* Graphics2D g2 = (Graphics2D) g;
+     g2.setComposite(
         AlphaComposite.getInstance(
              AlphaComposite.SRC_OVER, value));*/
     }