X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFeatureRenderer.java;h=fae19e84fb0e0e0ef8b48da6d8bf000846f6d57c;hb=449001e7a8c9aad77117daa36567f3e8313646ea;hp=091a1270931aad62682f475639876521ec1a5942;hpb=d355ad106f73e0de0abc3fb3f375af4eaf352591;p=jalview.git

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index 091a127..fae19e8 100755
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -41,6 +41,10 @@ public class FeatureRenderer
     // to be added, in the correct order or rendering
     Vector featuresDisplayed;
 
+    // A higher level for grouping features of a
+    // paritcular type
+    Hashtable featureGroups = null;
+
     Color currentColour = null;
 
     boolean drawText = true;
@@ -113,6 +117,14 @@ public class FeatureRenderer
             if(sf==null)
               continue;
 
+            if(featureGroups!=null
+               && sf.getFeatureGroup()!=null
+               && featureGroups.containsKey(sf.getFeatureGroup())
+               && !((Boolean)featureGroups.get(sf.getFeatureGroup())).booleanValue())
+            {
+              continue;
+            }
+
 
             if (sf.getBegin() > seq.getEnd())
             {
@@ -211,6 +223,15 @@ public class FeatureRenderer
       featureColours.put(featureType, col);
     }
 
+    public void addNewFeature(String name, Color col)
+    {
+      setColour(name, col);
+      if (featuresDisplayed == null)
+        featuresDisplayed = new Vector();
+      featuresDisplayed.insertElementAt(name, 0);
+    }
+
+
  /*   public void setTransparency(float value)
     {
       transparency = value;