X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFeatureSettings.java;h=20d4d7453dcd0d026c9946bd2dc14928703b82df;hb=refs%2Fheads%2Ffeatures%2FJAL-2446NCList;hp=f6f9727d6993fea63be079c7a896fc4660adf9d7;hpb=d1bb7a31fc091606aedbc255a5766ac79e36fa91;p=jalview.git

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index f6f9727..20d4d74 100755
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -63,9 +63,9 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
-public class FeatureSettings extends Panel implements ItemListener,
-        MouseListener, MouseMotionListener, ActionListener,
-        AdjustmentListener, FeatureSettingsControllerI
+public class FeatureSettings extends Panel
+        implements ItemListener, MouseListener, MouseMotionListener,
+        ActionListener, AdjustmentListener, FeatureSettingsControllerI
 {
   FeatureRenderer fr;
 
@@ -135,11 +135,18 @@ public class FeatureSettings extends Panel implements ItemListener,
 
     add(lowerPanel, BorderLayout.SOUTH);
 
-    groupPanel.setLayout(new GridLayout(
-            (fr.getFeatureGroupsSize()) / 4 + 1, 4)); // JBPNote - this was
-                                                      // scaled on number of
-                                                      // visible groups. seems
-                                                      // broken
+    groupPanel.setLayout(
+            new GridLayout((fr.getFeatureGroupsSize()) / 4 + 1, 4)); // JBPNote
+                                                                     // - this
+                                                                     // was
+                                                                     // scaled
+                                                                     // on
+                                                                     // number
+                                                                     // of
+                                                                     // visible
+                                                                     // groups.
+                                                                     // seems
+                                                                     // broken
     groupPanel.validate();
 
     add(groupPanel, BorderLayout.NORTH);
@@ -174,14 +181,12 @@ public class FeatureSettings extends Panel implements ItemListener,
   public void paint(Graphics g)
   {
     g.setColor(Color.black);
-    g.drawString(MessageManager
-            .getString("label.no_features_added_to_this_alignment"), 10, 20);
-    g.drawString(MessageManager
-            .getString("label.features_can_be_added_from_searches_1"), 10,
-            40);
-    g.drawString(MessageManager
-            .getString("label.features_can_be_added_from_searches_2"), 10,
-            60);
+    g.drawString(MessageManager.getString(
+            "label.no_features_added_to_this_alignment"), 10, 20);
+    g.drawString(MessageManager.getString(
+            "label.features_can_be_added_from_searches_1"), 10, 40);
+    g.drawString(MessageManager.getString(
+            "label.features_can_be_added_from_searches_2"), 10, 60);
   }
 
   protected void popupSort(final MyCheckbox check,
@@ -189,8 +194,9 @@ public class FeatureSettings extends Panel implements ItemListener,
   {
     final String type = check.type;
     final FeatureColourI typeCol = fr.getFeatureStyle(type);
-    PopupMenu men = new PopupMenu(MessageManager.formatMessage(
-            "label.settings_for_type", new String[] { type }));
+    PopupMenu men = new PopupMenu(MessageManager
+            .formatMessage("label.settings_for_type", new String[]
+            { type }));
     java.awt.MenuItem scr = new MenuItem(
             MessageManager.getString("label.sort_by_score"));
     men.add(scr);
@@ -201,8 +207,9 @@ public class FeatureSettings extends Panel implements ItemListener,
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        me.ap.alignFrame.avc.sortAlignmentByFeatureScore(Arrays
-                .asList(new String[] { type }));
+        me.ap.alignFrame.avc
+                .sortAlignmentByFeatureScore(Arrays.asList(new String[]
+                { type }));
       }
 
     });
@@ -214,8 +221,9 @@ public class FeatureSettings extends Panel implements ItemListener,
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        me.ap.alignFrame.avc.sortAlignmentByFeatureDensity(Arrays
-                .asList(new String[] { type }));
+        me.ap.alignFrame.avc
+                .sortAlignmentByFeatureDensity(Arrays.asList(new String[]
+                { type }));
       }
 
     });
@@ -279,8 +287,8 @@ public class FeatureSettings extends Panel implements ItemListener,
     });
     men.add(selectContaining);
 
-    MenuItem selectNotContaining = new MenuItem(
-            MessageManager.getString("label.select_columns_not_containing"));
+    MenuItem selectNotContaining = new MenuItem(MessageManager
+            .getString("label.select_columns_not_containing"));
     selectNotContaining.addActionListener(new ActionListener()
     {
       @Override
@@ -454,8 +462,8 @@ public class FeatureSettings extends Panel implements ItemListener,
       addCheck(groupsChanged, type);
     }
 
-    featurePanel.setLayout(new GridLayout(featurePanel.getComponentCount(),
-            1, 10, 5));
+    featurePanel.setLayout(
+            new GridLayout(featurePanel.getComponentCount(), 1, 10, 5));
     featurePanel.validate();
 
     if (scrollPane != null)
@@ -634,8 +642,8 @@ public class FeatureSettings extends Panel implements ItemListener,
     }
     else
     {
-      comp = featurePanel.getComponentAt(evt.getX(), evt.getY()
-              + evt.getComponent().getLocation().y);
+      comp = featurePanel.getComponentAt(evt.getX(),
+              evt.getY() + evt.getComponent().getLocation().y);
     }
 
     if (comp != null && comp instanceof Checkbox)